AutismKB 2.0

Annotation Detail for ARMC8


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Basic Information Top
Gene Symbol:ARMC8 ( HSPC056,MGC10058,MGC4880 )
Gene Full Name: armadillo repeat containing 8
Band: 3q22.3
Quick LinksEntrez ID:25852; OMIM: NA; Uniprot ID:ARMC8_HUMAN; ENSEMBL ID: ENSG00000114098; HGNC ID: 24999
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body5 / 7076170
blastocyst7 / 62319112
fetus65 / 564012115
neonate0 / 310970 
infant0 / 236200 
juvenile3 / 5555653
adult173 / 193912189
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor7 / 9417874
cervical tumor2 / 3436658
chondrosarcoma6 / 8282372
colorectal tumor3 / 11424626
esophageal tumor2 / 17290115
gastrointestinal tumor9 / 11936975
germ cell tumor21 / 26384579
glioma4 / 10688337
head and neck tumor17 / 136302124
kidney tumor1 / 6895914
leukemia5 / 9584252
liver tumor3 / 9635931
lung tumor9 / 10312787
lymphoma4 / 7175555
non-neoplasia6 / 9725061
normal294 / 336030787
ovarian tumor4 / 7668252
pancreatic tumor12 / 104616114
primitive neuroectodermal tumor of the CNS8 / 12568063
prostate cancer1 / 1026809
retinoblastoma0 / 463560 
skin tumor2 / 12494916
soft tissue/muscle tissue tumor64 / 125191511
uterine tumor6 / 9025766
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites3 / 4001574
bladder0 / 297570 
blood8 / 12347864
bone4 / 7165555
bone marrow3 / 4880161
brain118 / 1100989107
cervix2 / 4817141
connective tissue62 / 149255415
ear1 / 1621261
embryonic tissue18 / 21572283
esophagus2 / 2020998
eye5 / 21105423
heart7 / 8962678
intestine8 / 23447234
kidney21 / 21177799
larynx0 / 241450 
liver10 / 20774348
lung19 / 33697456
lymph1 / 4427022
lymph node10 / 91610109
mammary gland14 / 15327191
mouth18 / 67052268
muscle8 / 10771574
nerve1 / 1576863
ovary6 / 10205158
pancreas13 / 21481260
parathyroid1 / 2053948
pharynx5 / 41328120
pituitary gland0 / 165850 
placenta16 / 28082556
prostate4 / 18934521
salivary gland0 / 201550 
skin4 / 21057418
spleen3 / 5395255
stomach8 / 9661982
testis36 / 330442108
thymus11 / 81131135
thyroid0 / 474730 
tonsil0 / 169990 
trachea3 / 5241357
umbilical cord0 / 136800 
uterus17 / 23287872
vascular2 / 5178038
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 203486_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts15.75
Adipocyte6.4
AdrenalCortex4.35
Adrenalgland3.4
Amygdala5.85
Appendix4.1
AtrioventricularNode3.15
BDCA4+_DentriticCells10.65
Bonemarrow4
BronchialEpithelialCells4.05
CD105+_Endothelial44.9
CD14+_Monocytes5.65
CD19+_BCells(neg._sel.)12.85
CD33+_Myeloid7.7
CD34+18.75
CD4+_Tcells19.8
CD56+_NKCells17.2
CD71+_EarlyErythroid53.8
CD8+_Tcells14
CardiacMyocytes5.05
Caudatenucleus3.6
Cerebellum3.25
CerebellumPeduncles4.65
CiliaryGanglion2.9
CingulateCortex4.2
Colorectaladenocarcinoma4.1
DorsalRootGanglion3.15
FetalThyroid3.9
Fetalbrain4.25
Fetalliver8.7
Fetallung3.35
GlobusPallidus3
Heart5.15
Hypothalamus4.45
Kidney3.25
Leukemia_chronicMyelogenousK-5623.65
Leukemia_promyelocytic-HL-603.55
Leukemialymphoblastic(MOLT-4)3.25
Liver5.6
Lung4.2
Lymphnode3.5
Lymphoma_burkitts(Daudi)5.5
Lymphoma_burkitts(Raji)5.55
MedullaOblongata3.75
OccipitalLobe3.6
OlfactoryBulb3.15
Ovary2.7
Pancreas3.1
PancreaticIslet4.3
ParietalLobe4.25
Pituitary4.7
Placenta3.9
Pons3.85
PrefrontalCortex5.75
Prostate4.75
Salivarygland3.3
SkeletalMuscle4.8
Skin3.2
SmoothMuscle4.6
Spinalcord4.3
SubthalamicNucleus3.65
SuperiorCervicalGanglion5.3
TemporalLobe3.7
Testis3.5
TestisGermCell3.4
TestisIntersitial4
TestisLeydigCell4.5
TestisSeminiferousTubule3.5
Thalamus4.1
Thymus3.25
Thyroid5.2
Tongue4.1
Tonsil3.95
Trachea3.4
TrigeminalGanglion4.1
Uterus3.9
UterusCorpus3.65
WholeBlood4.45
Wholebrain3.45
colon4.15
pineal_day9.12
pineal_night9.16
retina5.125
small_intestine4.5
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P187954
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala7.27 ± 0.44
Basal Forebrain7.5 ± 0.21
Basal Part of Pons8.15 ± 0.2
Cerebellar Cortex7.88 ± 0.14
Cerebellar Nuclei7.79 ± 0.25
Claustrum7.82 ± 0.45
Epithalamus7.57 ± 0.24
Frontal Lobe7.82 ± 0.33
Globus Pallidus7.07 ± 0.28
Hypothalamus7.85 ± 0.26
Insula7.69 ± 0.18
Limbic Lobe7.47 ± 0.43
Mesencephalon7.57 ± 0.41
Myelencephalon7.57 ± 0.45
Occipital Lobe7.44 ± 0.48
Parietal Lobe7.88 ± 0.36
Pontine Tegmentum7.63 ± 0.31
Striatum6.99 ± 0.42
Subthalamus8.4 ± 0.18
Temporal Lobe7.72 ± 0.28
Thalamus7.63 ± 0.34
White Matter6.91 ± 0.2
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Armc8CBCerebellum21.41
23.68
Armc8CTXCerebral cortex65.25
52.29
Armc8HIPHippocampal region54.41
72.06
Armc8HPFHippocampal formation60.81
67.04
Armc8HYHypothalamus38.15
32.43
Armc8LSXLateral septal complex52.31
38.16
Armc8MBMidbrain23.5
20.88
Armc8MYMedulla37.13
37.36
Armc8OLFOlfactory bulb68.84
62.3
Armc8PPons35.9
36.66
Armc8PALPallidum35.25
31.98
Armc8RHPRetrohippocampal region76.72
63.1
Armc8sAMYStriatum-like amygdalar nuclei91.06
71.76
Armc8STRStriatum53.85
40.16
Armc8STRdStriatum dorsal region42.63
29.93
Armc8STRvStriatum ventral region73.64
55.77
Armc8THThalamus23.49
18.74
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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