AutismKB 2.0

Annotation Detail for SUMF2


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Basic Information Top
Gene Symbol:SUMF2 ( DKFZp566I1024,DKFZp686I1024,DKFZp686L17160,DKFZp781L1035,MGC99485,pFGE )
Gene Full Name: sulfatase modifying factor 2
Band: 7p11.2
Quick LinksEntrez ID:25870; OMIM: 607940; Uniprot ID:SUMF2_HUMAN; ENSEMBL ID: ENSG00000129103; HGNC ID: 20415
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body5 / 7076170
blastocyst7 / 62319112
fetus14 / 56401224
neonate7 / 31097225
infant3 / 23620127
juvenile13 / 55556233
adult188 / 193912196
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma1 / 1747557
breast (mammary gland) tumor30 / 94178318
cervical tumor3 / 3436687
chondrosarcoma7 / 8282384
colorectal tumor11 / 11424696
esophageal tumor22 / 172901272
gastrointestinal tumor26 / 119369217
germ cell tumor22 / 26384583
glioma21 / 106883196
head and neck tumor10 / 13630273
kidney tumor10 / 68959145
leukemia8 / 9584283
liver tumor11 / 96359114
lung tumor10 / 10312796
lymphoma7 / 7175597
non-neoplasia16 / 97250164
normal273 / 336030781
ovarian tumor5 / 7668265
pancreatic tumor6 / 10461657
primitive neuroectodermal tumor of the CNS18 / 125680143
prostate cancer12 / 102680116
retinoblastoma7 / 46356151
skin tumor27 / 124949216
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor13 / 90257144
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue2 / 13106152
adrenal gland5 / 33197150
ascites5 / 40015124
bladder6 / 29757201
blood18 / 123478145
bone1 / 7165513
bone marrow3 / 4880161
brain112 / 1100989101
cervix9 / 48171186
connective tissue30 / 149255200
ear0 / 162120 
embryonic tissue16 / 21572274
esophagus22 / 202091088
eye12 / 21105456
heart1 / 8962611
intestine27 / 234472115
kidney36 / 211777169
larynx2 / 2414582
liver15 / 20774372
lung23 / 33697468
lymph7 / 44270158
lymph node3 / 9161032
mammary gland34 / 153271221
mouth2 / 6705229
muscle0 / 1077150 
nerve2 / 15768126
ovary8 / 10205178
pancreas6 / 21481227
parathyroid0 / 205390 
pharynx5 / 41328120
pituitary gland0 / 165850 
placenta34 / 280825121
prostate24 / 189345126
salivary gland2 / 2015599
skin34 / 210574161
spleen5 / 5395292
stomach28 / 96619289
testis23 / 33044269
thymus14 / 81131172
thyroid12 / 47473252
tonsil0 / 169990 
trachea6 / 52413114
umbilical cord1 / 1368073
uterus24 / 232878103
vascular11 / 51780212
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 201326_at
Cell line Expression level Expression bar
721_B_lymphoblasts607.9
Adipocyte98.35
AdrenalCortex65.85
Adrenalgland46.8
Amygdala185.85
Appendix52.55
AtrioventricularNode33.15
BDCA4+_DentriticCells237.15
Bonemarrow48.1
BronchialEpithelialCells472.95
CD105+_Endothelial689.5
CD14+_Monocytes185.55
CD19+_BCells(neg._sel.)137.25
CD33+_Myeloid297
CD34+698.15
CD4+_Tcells137.55
CD56+_NKCells260.05
CD71+_EarlyErythroid167.4
CD8+_Tcells80.3
CardiacMyocytes142.1
Caudatenucleus77.8
Cerebellum33.05
CerebellumPeduncles75.15
CiliaryGanglion33.45
CingulateCortex130.55
Colorectaladenocarcinoma395.7
DorsalRootGanglion40.1
FetalThyroid163.75
Fetalbrain247.85
Fetalliver60
Fetallung97.85
GlobusPallidus51.15
Heart82.5
Hypothalamus282.85
Kidney41.65
Leukemia_chronicMyelogenousK-562191.4
Leukemia_promyelocytic-HL-60206.6
Leukemialymphoblastic(MOLT-4)156.3
Liver39.35
Lung50.35
Lymphnode49.9
Lymphoma_burkitts(Daudi)212
Lymphoma_burkitts(Raji)238.4
MedullaOblongata78.3
OccipitalLobe77.95
OlfactoryBulb72.95
Ovary39.8
Pancreas80.8
PancreaticIslet121.95
ParietalLobe75.25
Pituitary124.65
Placenta62.9
Pons51.1
PrefrontalCortex341.1
Prostate97.75
Salivarygland50.6
SkeletalMuscle58.7
Skin51.9
SmoothMuscle181.45
Spinalcord103.8
SubthalamicNucleus78.05
SuperiorCervicalGanglion55.95
TemporalLobe83.35
Testis46.65
TestisGermCell84.55
TestisIntersitial49.1
TestisLeydigCell49.5
TestisSeminiferousTubule48.3
Thalamus138.25
Thymus42.15
Thyroid134.6
Tongue71.15
Tonsil55.65
Trachea37.7
TrigeminalGanglion57.7
Uterus109
UterusCorpus51.4
WholeBlood83.2
Wholebrain89.7
colon81.75
pineal_day219.14
pineal_night178.62
retina74.85
small_intestine91.15
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P123265
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.32 ± 0.38
Basal Forebrain6.56 ± 0.2
Basal Part of Pons6.69 ± 0.24
Cerebellar Cortex6.58 ± 0.2
Cerebellar Nuclei6.52 ± 0.28
Claustrum6.38 ± 0.5
Epithalamus6.92 ± 0.31
Frontal Lobe6.59 ± 0.3
Globus Pallidus7.1 ± 0.23
Hypothalamus6.67 ± 0.14
Insula6.47 ± 0.2
Limbic Lobe6.48 ± 0.36
Mesencephalon6.56 ± 0.35
Myelencephalon6.62 ± 0.31
Occipital Lobe6.6 ± 0.26
Parietal Lobe6.63 ± 0.28
Pontine Tegmentum6.5 ± 0.34
Striatum6.32 ± 0.34
Subthalamus6.47 ± 0.49
Temporal Lobe6.59 ± 0.26
Thalamus6.65 ± 0.26
White Matter7.62 ± 0.31
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Sumf2CBCerebellum1.04
1.62
Sumf2CTXCerebral cortex1.36
1.82
Sumf2HIPHippocampal region0.99
1.37
Sumf2HPFHippocampal formation0.8
1
Sumf2HYHypothalamus0.56
0.51
Sumf2LSXLateral septal complex0.18
0.12
Sumf2MBMidbrain0.71
0.76
Sumf2MYMedulla2.64
2.77
Sumf2OLFOlfactory bulb1.26
1.14
Sumf2PPons0.78
0.85
Sumf2PALPallidum0.21
0.17
Sumf2RHPRetrohippocampal region0.34
0.31
Sumf2sAMYStriatum-like amygdalar nuclei0.25
1.32
Sumf2STRStriatum0.5
0.67
Sumf2STRdStriatum dorsal region0.55
0.76
Sumf2STRvStriatum ventral region0.54
0.41
Sumf2THThalamus0.82
1.14
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00009387 12 290 301 CAADAGRPPGEL Peptide Atlas
SUMF2_HUMAN_113 10 113 122 SVLWWLPVEK PRIDE
SUMF2_HUMAN_137 16 137 152 ERLEHPVLHVSWNDAR PRIDE
SUMF2_HUMAN_162 12 162 173 LPTEEEWEFAAR PRIDE
SUMF2_HUMAN_26 12 26 37 QATSMVQLQGGR PRIDE
SUMF2_HUMAN_274 15 274 288 MGNTPDSASDNLGFR PRIDE
SUMF2_HUMAN_289 12 289 300 CAADAGRPPGEL PRIDE
SUMF2_HUMAN_37 11 37 47 FLMGTNSPDSR PRIDE
SUMF2_HUMAN_38 11 38 48 FLMGTNSPDSR PRIDE
SUMF2_HUMAN_55 17 55 71 EATVKPFAIDIFPVTNK PRIDE
SUMF2_HUMAN_55 20 55 74 EATVKPFAIDIFPVTNKDFR PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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