Annotation Detail for ABI3BP
Basic Information Top
| Gene Symbol: | ABI3BP ( FLJ41743,FLJ41754,NESHBP,TARSH ) |
|---|---|
| Gene Full Name: | ABI family, member 3 (NESH) binding protein |
| Band: | 3q12.2 |
| Quick Links | Entrez ID:25890; OMIM: 606279; Uniprot ID:TARSH_HUMAN; ENSEMBL ID: ENSG00000154175; HGNC ID: 17265 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.477015
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 37 / 564012 | 65 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 1 / 23620 | 42 |  |
| juvenile | 2 / 55556 | 35 | |
| adult | 103 / 1939121 | 53 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 11 / 82823 | 132 | |
| colorectal tumor | 1 / 114246 | 8 |  |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 3 / 119369 | 25 | |
| germ cell tumor | 10 / 263845 | 37 | |
| glioma | 4 / 106883 | 37 | |
| head and neck tumor | 4 / 136302 | 29 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 29 / 97250 | 298 |  |
| normal | 189 / 3360307 | 56 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 3 / 104616 | 28 | |
| primitive neuroectodermal tumor of the CNS | 2 / 125680 | 15 | |
| prostate cancer | 1 / 102680 | 9 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 2 / 123478 | 16 | |
| bone | 8 / 71655 | 111 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 19 / 1100989 | 17 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 46 / 149255 | 308 | |
| ear | 1 / 16212 | 61 | |
| embryonic tissue | 1 / 215722 | 4 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 13 / 211054 | 61 | |
| heart | 12 / 89626 | 133 | |
| intestine | 3 / 234472 | 12 | |
| kidney | 8 / 211777 | 37 | |
| larynx | 0 / 24145 | 0 | |
| liver | 2 / 207743 | 9 | |
| lung | 8 / 336974 | 23 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 1 / 91610 | 10 | |
| mammary gland | 4 / 153271 | 26 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 12 / 107715 | 111 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 4 / 214812 | 18 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 2 / 41328 | 48 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 18 / 280825 | 64 | |
| prostate | 7 / 189345 | 36 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 7 / 210574 | 33 | |
| spleen | 2 / 53952 | 37 | |
| stomach | 3 / 96619 | 31 | |
| testis | 12 / 330442 | 36 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 28 / 47473 | 589 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 8 / 52413 | 152 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 5 / 232878 | 21 | |
| vascular | 16 / 51780 | 308 | |
Microarray in - Probe name: CUST_15613_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4 ± 0.63 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.47 ± 0.4 | |
| Basal Part of Pons | 2.72 ± 0.5 | |
| Cerebellar Cortex | 2.57 ± 0.46 | |
| Cerebellar Nuclei | 2.95 ± 0.7 | |
| Claustrum | 3.31 ± 0.46 | |
| Epithalamus | 5.19 ± 1.35 | |
| Frontal Lobe | 3.01 ± 0.94 | |
| Globus Pallidus | 4.81 ± 0.44 | |
| Hypothalamus | 4 ± 1.12 | |
| Insula | 3.18 ± 0.49 | |
| Limbic Lobe | 3.46 ± 0.76 | |
| Mesencephalon | 3.42 ± 0.73 | |
| Myelencephalon | 3.4 ± 0.91 | |
| Occipital Lobe | 3.67 ± 0.89 | |
| Parietal Lobe | 2.98 ± 0.78 | |
| Pontine Tegmentum | 3.1 ± 0.75 | |
| Striatum | 4.1 ± 0.84 | |
| Subthalamus | 2.89 ± 0.56 | |
| Temporal Lobe | 3.35 ± 0.8 | |
| Thalamus | 2.62 ± 0.63 | |
| White Matter | 5.02 ± 0.58 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Abi3bp | CB | Cerebellum | 17.58 | |
| 21.98 | | |||
| Abi3bp | CTX | Cerebral cortex | 16.26 | |
| 11.86 | | |||
| Abi3bp | HIP | Hippocampal region | 7.79 | |
| 8.07 | | |||
| Abi3bp | HPF | Hippocampal formation | 6.83 | |
| 6.58 | | |||
| Abi3bp | HY | Hypothalamus | 5.25 | |
| 4.38 | | |||
| Abi3bp | LSX | Lateral septal complex | 3.77 | |
| 2.51 | | |||
| Abi3bp | MB | Midbrain | 5.86 | |
| 5.4 | | |||
| Abi3bp | MY | Medulla | 6.45 | |
| 7.17 | | |||
| Abi3bp | OLF | Olfactory bulb | 60.87 | |
| 70.73 | | |||
| Abi3bp | P | Pons | 8 | |
| 7.98 | | |||
| Abi3bp | PAL | Pallidum | 4.63 | |
| 4.43 | | |||
| Abi3bp | RHP | Retrohippocampal region | 4.91 | |
| 4.24 | | |||
| Abi3bp | sAMY | Striatum-like amygdalar nuclei | 11.1 | |
| 8.29 | | |||
| Abi3bp | STR | Striatum | 8.86 | |
| 7.71 | | |||
| Abi3bp | STRd | Striatum dorsal region | 10.33 | |
| 9.97 | | |||
| Abi3bp | STRv | Striatum ventral region | 6.37 | |
| 4.15 | | |||
| Abi3bp | TH | Thalamus | 8.27 | |
| 8.43 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00094456 | 13 | 1024 | 1036 | TGQQLTSDQLPIK | Peptide Atlas |