AutismKB 2.0

Annotation Detail for GALNT3


View Evidences View Variants View Annotations
Basic Information Top
Gene Symbol:GALNT3 ( DKFZp686C10199,GalNAc-T3,HFTC,HHS,MGC61909 )
Gene Full Name: UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3 (GalNAc-T3)
Band: 2q24.3
Quick LinksEntrez ID:2591; OMIM: 601756; Uniprot ID:GALT3_HUMAN; ENSEMBL ID: ENSG00000115339; HGNC ID: 4125
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body2 / 7076128
blastocyst3 / 6231948
fetus4 / 5640127
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult119 / 193912161
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma2 / 17475114
breast (mammary gland) tumor1 / 9417810
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor20 / 114246175
esophageal tumor3 / 17290173
gastrointestinal tumor43 / 119369360
germ cell tumor1 / 2638453
glioma0 / 1068830 
head and neck tumor19 / 136302139
kidney tumor0 / 689590 
leukemia2 / 9584220
liver tumor1 / 9635910
lung tumor1 / 1031279
lymphoma0 / 717550 
non-neoplasia3 / 9725030
normal72 / 336030721
ovarian tumor4 / 7668252
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer4 / 10268038
retinoblastoma0 / 463560 
skin tumor5 / 12494940
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor8 / 9025788
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites3 / 4001574
bladder3 / 29757100
blood0 / 1234780 
bone0 / 716550 
bone marrow3 / 4880161
brain6 / 11009895
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue5 / 21572223
esophagus3 / 20209148
eye4 / 21105418
heart0 / 896260 
intestine28 / 234472119
kidney2 / 2117779
larynx2 / 2414582
liver1 / 2077434
lung7 / 33697420
lymph0 / 442700 
lymph node3 / 9161032
mammary gland3 / 15327119
mouth16 / 67052238
muscle4 / 10771537
nerve0 / 157680 
ovary4 / 10205139
pancreas4 / 21481218
parathyroid1 / 2053948
pharynx1 / 4132824
pituitary gland0 / 165850 
placenta10 / 28082535
prostate11 / 18934558
salivary gland1 / 2015549
skin6 / 21057428
spleen0 / 539520 
stomach40 / 96619413
testis32 / 33044296
thymus1 / 8113112
thyroid0 / 474730 
tonsil0 / 169990 
trachea19 / 52413362
umbilical cord0 / 136800 
uterus17 / 23287872
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 203398_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts7.6
Adipocyte6.3
AdrenalCortex7.3
Adrenalgland5.4
Amygdala6.6
Appendix6.85
AtrioventricularNode6.45
BDCA4+_DentriticCells6.85
Bonemarrow6.4
BronchialEpithelialCells6.1
CD105+_Endothelial6.45
CD14+_Monocytes6.7
CD19+_BCells(neg._sel.)6.8
CD33+_Myeloid8.15
CD34+8
CD4+_Tcells6.9
CD56+_NKCells7.25
CD71+_EarlyErythroid5.95
CD8+_Tcells6.1
CardiacMyocytes8.5
Caudatenucleus5.65
Cerebellum5.15
CerebellumPeduncles7.35
CiliaryGanglion4.7
CingulateCortex6.55
Colorectaladenocarcinoma6.35
DorsalRootGanglion6
FetalThyroid6.15
Fetalbrain7.2
Fetalliver5.55
Fetallung5.25
GlobusPallidus5.1
Heart8.9
Hypothalamus6.7
Kidney5.4
Leukemia_chronicMyelogenousK-5625.75
Leukemia_promyelocytic-HL-605.6
Leukemialymphoblastic(MOLT-4)5.1
Liver8.55
Lung7
Lymphnode5.5
Lymphoma_burkitts(Daudi)8.2
Lymphoma_burkitts(Raji)9.35
MedullaOblongata5.8
OccipitalLobe5.75
OlfactoryBulb5.05
Ovary4.75
Pancreas5.15
PancreaticIslet6.7
ParietalLobe6.85
Pituitary7.45
Placenta6.55
Pons6.9
PrefrontalCortex7.95
Prostate7.45
Salivarygland5.5
SkeletalMuscle7.55
Skin5.35
SmoothMuscle7.2
Spinalcord6.8
SubthalamicNucleus5.9
SuperiorCervicalGanglion8.05
TemporalLobe5.85
Testis5.35
TestisGermCell5.2
TestisIntersitial5.3
TestisLeydigCell6.75
TestisSeminiferousTubule5.45
Thalamus6.45
Thymus4.9
Thyroid7.95
Tongue6.3
Tonsil6.3
Trachea5.3
TrigeminalGanglion6.95
Uterus5.25
UterusCorpus6.05
WholeBlood7
Wholebrain5
colon6.4
pineal_day8
pineal_night7.82
retina7.675
small_intestine6.2
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_12090_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala4.21 ± 0.46
Basal Forebrain3.99 ± 0.3
Basal Part of Pons3.63 ± 0.68
Cerebellar Cortex3.87 ± 0.65
Cerebellar Nuclei3.87 ± 0.56
Claustrum3.55 ± 1.1
Epithalamus6.06 ± 0.91
Frontal Lobe3.74 ± 0.71
Globus Pallidus4.29 ± 0.8
Hypothalamus4.24 ± 0.92
Insula3.6 ± 0.6
Limbic Lobe3.96 ± 0.74
Mesencephalon3.9 ± 0.76
Myelencephalon3.94 ± 0.85
Occipital Lobe4.67 ± 0.99
Parietal Lobe3.9 ± 0.75
Pontine Tegmentum3.92 ± 0.78
Striatum4.34 ± 0.95
Subthalamus3.9 ± 0.53
Temporal Lobe3.6 ± 0.78
Thalamus3.47 ± 0.65
White Matter4.69 ± 0.29
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Galnt3CBCerebellum0.27
1.01
Galnt3CTXCerebral cortex0.97
0.97
Galnt3HIPHippocampal region6.27
5.49
Galnt3HPFHippocampal formation4.01
3.35
Galnt3HYHypothalamus0.48
0.33
Galnt3LSXLateral septal complex0.2
0
Galnt3MBMidbrain0.91
0.77
Galnt3MYMedulla0.6
0.83
Galnt3OLFOlfactory bulb0.54
1.23
Galnt3PPons0.95
1.49
Galnt3PALPallidum0.04
0.06
Galnt3RHPRetrohippocampal region0.78
0.81
Galnt3sAMYStriatum-like amygdalar nuclei0.17
0.15
Galnt3STRStriatum0.23
0.31
Galnt3STRdStriatum dorsal region0.26
0.33
Galnt3STRvStriatum ventral region0.13
0.31
Galnt3THThalamus5.5
5.12
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00025638 10 148 157 HCFNAFASDR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


Copyright © 2017, Center for Bioinformatics , Peking University | All Rights Reserved