AutismKB 2.0

Annotation Detail for MYRIP


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Basic Information Top
Gene Symbol:MYRIP ( DKFZp586F1018,FLJ44025,MGC130034,MGC130035,SLAC2-C,SLAC2C )
Gene Full Name: myosin VIIA and Rab interacting protein
Band: 3p22.1
Quick LinksEntrez ID:25924; OMIM: 611790; Uniprot ID:MYRIP_HUMAN; ENSEMBL ID: ENSG00000170011; HGNC ID: 19156
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus10 / 56401217
neonate0 / 310970 
infant0 / 236200 
juvenile1 / 5555617
adult18 / 19391219
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor9 / 26384534
glioma1 / 1068839
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor6 / 9635962
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia1 / 9725010
normal44 / 336030713
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain21 / 110098919
cervix0 / 481710 
connective tissue0 / 1492550 
ear1 / 1621261
embryonic tissue1 / 2157224
esophagus0 / 202090 
eye6 / 21105428
heart0 / 896260 
intestine1 / 2344724
kidney2 / 2117779
larynx0 / 241450 
liver6 / 20774328
lung0 / 3369740 
lymph0 / 442700 
lymph node1 / 9161010
mammary gland1 / 1532716
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas1 / 2148124
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate2 / 18934510
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach0 / 966190 
testis5 / 33044215
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord0 / 136800 
uterus1 / 2328784
vascular2 / 5178038
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 214156_at
Cell line Expression level Expression bar
721_B_lymphoblasts11.3
Adipocyte11.85
AdrenalCortex24.35
Adrenalgland12.6
Amygdala255.95
Appendix21.55
AtrioventricularNode23.5
BDCA4+_DentriticCells12.35
Bonemarrow17.75
BronchialEpithelialCells11.75
CD105+_Endothelial12.9
CD14+_Monocytes15.95
CD19+_BCells(neg._sel.)13.15
CD33+_Myeloid15.15
CD34+15.1
CD4+_Tcells11.6
CD56+_NKCells13.15
CD71+_EarlyErythroid16.45
CD8+_Tcells10.8
CardiacMyocytes36.85
Caudatenucleus20.75
Cerebellum16.6
CerebellumPeduncles21.7
CiliaryGanglion20.35
CingulateCortex22.25
Colorectaladenocarcinoma12.8
DorsalRootGanglion16.85
FetalThyroid16.2
Fetalbrain39.25
Fetalliver12.2
Fetallung9.4
GlobusPallidus15.6
Heart31.5
Hypothalamus31.75
Kidney13.9
Leukemia_chronicMyelogenousK-56211.1
Leukemia_promyelocytic-HL-6011.35
Leukemialymphoblastic(MOLT-4)8.9
Liver26.25
Lung14.15
Lymphnode10
Lymphoma_burkitts(Daudi)18.05
Lymphoma_burkitts(Raji)23.95
MedullaOblongata11.4
OccipitalLobe29.6
OlfactoryBulb10.05
Ovary13.45
Pancreas13.6
PancreaticIslet14.55
ParietalLobe18.5
Pituitary16.25
Placenta11.7
Pons14.55
PrefrontalCortex104.8
Prostate14.8
Salivarygland20.3
SkeletalMuscle29.55
Skin19.4
SmoothMuscle14.55
Spinalcord13.95
SubthalamicNucleus15.9
SuperiorCervicalGanglion32.75
TemporalLobe32.9
Testis10.85
TestisGermCell9.8
TestisIntersitial12.45
TestisLeydigCell15.15
TestisSeminiferousTubule11
Thalamus16.55
Thymus9.2
Thyroid15
Tongue20.5
Tonsil14.15
Trachea10.65
TrigeminalGanglion23.4
Uterus16.2
UterusCorpus17.4
WholeBlood13.3
Wholebrain50
colon16.55
pineal_day16.06
pineal_night16.56
retina281.5
small_intestine12.35
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_6373_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.66 ± 0.32
Basal Forebrain5.47 ± 0.66
Basal Part of Pons6.1 ± 0.41
Cerebellar Cortex6.23 ± 0.21
Cerebellar Nuclei4.98 ± 0.45
Claustrum5.55 ± 0.49
Epithalamus5.28 ± 0.58
Frontal Lobe5.78 ± 0.52
Globus Pallidus4.53 ± 0.55
Hypothalamus5.5 ± 0.62
Insula6.03 ± 0.29
Limbic Lobe6.26 ± 0.48
Mesencephalon5.92 ± 0.78
Myelencephalon5.73 ± 0.65
Occipital Lobe5.78 ± 0.54
Parietal Lobe5.84 ± 0.57
Pontine Tegmentum5.58 ± 0.84
Striatum4.28 ± 0.72
Subthalamus4.74 ± 0.4
Temporal Lobe6.05 ± 0.46
Thalamus5.48 ± 0.51
White Matter4.9 ± 0.31
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
MyripCBCerebellum30.44
39.43
MyripCTXCerebral cortex100
100
MyripHIPHippocampal region50.89
88.05
MyripHPFHippocampal formation58.19
78.14
MyripHYHypothalamus29.27
22.71
MyripLSXLateral septal complex10.78
6.17
MyripMBMidbrain31.94
28.61
MyripMYMedulla49.11
53.87
MyripOLFOlfactory bulb60.28
56.52
MyripPPons36.76
38.08
MyripPALPallidum35.07
33.61
MyripRHPRetrohippocampal region73.38
64.63
MyripsAMYStriatum-like amygdalar nuclei49.04
40.61
MyripSTRStriatum42.34
33.04
MyripSTRdStriatum dorsal region42.2
32.29
MyripSTRvStriatum ventral region48.33
37.12
MyripTHThalamus73.12
63.24
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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