Annotation Detail for GEMIN5
Basic Information Top
| Gene Symbol: | GEMIN5 ( DKFZp586M1824,MGC142174 ) |
|---|---|
| Gene Full Name: | gem (nuclear organelle) associated protein 5 |
| Band: | 5q33.2 |
| Quick Links | Entrez ID:25929; OMIM: 607005; Uniprot ID:GEMI5_HUMAN; ENSEMBL ID: ENSG00000082516; HGNC ID: 20043 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.483921
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 2 / 62319 | 32 | |
| fetus | 24 / 564012 | 42 | |
| neonate | 1 / 31097 | 32 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 2 / 55556 | 35 | |
| adult | 67 / 1939121 | 34 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 1 / 17475 | 57 |  |
| breast (mammary gland) tumor | 3 / 94178 | 31 | |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 5 / 82823 | 60 | |
| colorectal tumor | 4 / 114246 | 35 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 6 / 119369 | 50 | |
| germ cell tumor | 26 / 263845 | 98 | |
| glioma | 2 / 106883 | 18 | |
| head and neck tumor | 3 / 136302 | 22 | |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 6 / 95842 | 62 | |
| liver tumor | 8 / 96359 | 83 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 8 / 71755 | 111 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 102 / 3360307 | 30 | |
| ovarian tumor | 4 / 76682 | 52 | |
| pancreatic tumor | 1 / 104616 | 9 |  |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 1 / 102680 | 9 | |
| retinoblastoma | 2 / 46356 | 43 | |
| skin tumor | 2 / 124949 | 16 | |
| soft tissue/muscle tissue tumor | 4 / 125191 | 31 | |
| uterine tumor | 2 / 90257 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 4 / 40015 | 99 | |
| bladder | 2 / 29757 | 67 | |
| blood | 7 / 123478 | 56 | |
| bone | 3 / 71655 | 41 | |
| bone marrow | 2 / 48801 | 40 | |
| brain | 36 / 1100989 | 32 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 3 / 149255 | 20 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 9 / 215722 | 41 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 5 / 211054 | 23 | |
| heart | 1 / 89626 | 11 | |
| intestine | 5 / 234472 | 21 | |
| kidney | 6 / 211777 | 28 | |
| larynx | 0 / 24145 | 0 | |
| liver | 9 / 207743 | 43 | |
| lung | 8 / 336974 | 23 | |
| lymph | 7 / 44270 | 158 | |
| lymph node | 5 / 91610 | 54 | |
| mammary gland | 3 / 153271 | 19 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 4 / 107715 | 37 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 5 / 102051 | 48 | |
| pancreas | 6 / 214812 | 27 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 2 / 280825 | 7 | |
| prostate | 5 / 189345 | 26 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 3 / 210574 | 14 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 2 / 96619 | 20 | |
| testis | 18 / 330442 | 54 | |
| thymus | 3 / 81131 | 36 | |
| thyroid | 2 / 47473 | 42 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 10 / 232878 | 42 | |
| vascular | 2 / 51780 | 38 | |
Microarray in - Probe name: CUST_6628_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.78 ± 0.54 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.59 ± 0.39 | |
| Basal Part of Pons | 4.19 ± 0.46 | |
| Cerebellar Cortex | 4.62 ± 0.33 | |
| Cerebellar Nuclei | 4.52 ± 0.48 | |
| Claustrum | 4.58 ± 0.67 | |
| Epithalamus | 4.81 ± 0.3 | |
| Frontal Lobe | 4.4 ± 0.47 | |
| Globus Pallidus | 4.78 ± 0.4 | |
| Hypothalamus | 4.86 ± 0.55 | |
| Insula | 4.53 ± 0.61 | |
| Limbic Lobe | 4.66 ± 0.45 | |
| Mesencephalon | 4.73 ± 0.41 | |
| Myelencephalon | 4.55 ± 0.49 | |
| Occipital Lobe | 4.92 ± 0.41 | |
| Parietal Lobe | 4.48 ± 0.46 | |
| Pontine Tegmentum | 4.64 ± 0.48 | |
| Striatum | 4.9 ± 0.43 | |
| Subthalamus | 4.46 ± 0.42 | |
| Temporal Lobe | 4.54 ± 0.44 | |
| Thalamus | 4.48 ± 0.54 | |
| White Matter | 5.39 ± 0.26 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Gemin5 | CB | Cerebellum | 2.53 | |
| 2.62 | | |||
| Gemin5 | CTX | Cerebral cortex | 1.9 | |
| 1.48 | | |||
| Gemin5 | HIP | Hippocampal region | 3.77 | |
| 3.39 | | |||
| Gemin5 | HPF | Hippocampal formation | 2.84 | |
| 2.46 | | |||
| Gemin5 | HY | Hypothalamus | 1.34 | |
| 1.17 | | |||
| Gemin5 | LSX | Lateral septal complex | 1.82 | |
| 1.32 | | |||
| Gemin5 | MB | Midbrain | 0.96 | |
| 1.1 | | |||
| Gemin5 | MY | Medulla | 5.63 | |
| 5.35 | | |||
| Gemin5 | OLF | Olfactory bulb | 2.49 | |
| 1.73 | | |||
| Gemin5 | P | Pons | 1.42 | |
| 1.72 | | |||
| Gemin5 | PAL | Pallidum | 1.69 | |
| 2.17 | | |||
| Gemin5 | RHP | Retrohippocampal region | 1.4 | |
| 1.24 | | |||
| Gemin5 | sAMY | Striatum-like amygdalar nuclei | 0.97 | |
| 1.18 | | |||
| Gemin5 | STR | Striatum | 1.2 | |
| 1.2 | | |||
| Gemin5 | STRd | Striatum dorsal region | 1.11 | |
| 1.25 | | |||
| Gemin5 | STRv | Striatum ventral region | 1.3 | |
| 0.79 | | |||
| Gemin5 | TH | Thalamus | 1.28 | |
| 1.19 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00002729 | 14 | 239 | 252 | GCYLATGSKDQTIR | Peptide Atlas |