AutismKB 2.0

Annotation Detail for FAM98A


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Basic Information Top
Gene Symbol:FAM98A ( DKFZp564F0522,DKFZp686O03192 )
Gene Full Name: family with sequence similarity 98, member A
Band: 2p22.3
Quick LinksEntrez ID:25940; OMIM: NA; Uniprot ID:FA98A_HUMAN; ENSEMBL ID: ENSG00000119812; HGNC ID: 24520
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body2 / 7076128
blastocyst4 / 6231964
fetus39 / 56401269
neonate1 / 3109732
infant1 / 2362042
juvenile4 / 5555671
adult124 / 193912163
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma3 / 17475171
breast (mammary gland) tumor7 / 9417874
cervical tumor0 / 343660 
chondrosarcoma5 / 8282360
colorectal tumor8 / 11424670
esophageal tumor0 / 172900 
gastrointestinal tumor7 / 11936958
germ cell tumor31 / 263845117
glioma8 / 10688374
head and neck tumor11 / 13630280
kidney tumor17 / 68959246
leukemia7 / 9584273
liver tumor6 / 9635962
lung tumor1 / 1031279
lymphoma4 / 7175555
non-neoplasia9 / 9725092
normal217 / 336030764
ovarian tumor3 / 7668239
pancreatic tumor6 / 10461657
primitive neuroectodermal tumor of the CNS6 / 12568047
prostate cancer6 / 10268058
retinoblastoma3 / 4635664
skin tumor3 / 12494924
soft tissue/muscle tissue tumor7 / 12519155
uterine tumor2 / 9025722
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites7 / 40015174
bladder2 / 2975767
blood3 / 12347824
bone2 / 7165527
bone marrow9 / 48801184
brain82 / 110098974
cervix0 / 481710 
connective tissue3 / 14925520
ear0 / 162120 
embryonic tissue7 / 21572232
esophagus0 / 202090 
eye12 / 21105456
heart8 / 8962689
intestine14 / 23447259
kidney38 / 211777179
larynx3 / 24145124
liver10 / 20774348
lung10 / 33697429
lymph3 / 4427067
lymph node3 / 9161032
mammary gland9 / 15327158
mouth3 / 6705244
muscle3 / 10771527
nerve2 / 15768126
ovary3 / 10205129
pancreas15 / 21481269
parathyroid3 / 20539146
pharynx4 / 4132896
pituitary gland0 / 165850 
placenta22 / 28082578
prostate14 / 18934573
salivary gland2 / 2015599
skin10 / 21057447
spleen6 / 53952111
stomach0 / 966190 
testis49 / 330442148
thymus2 / 8113124
thyroid1 / 4747321
tonsil0 / 169990 
trachea4 / 5241376
umbilical cord0 / 136800 
uterus18 / 23287877
vascular5 / 5178096
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 212333_at
Cell line Expression level Expression bar
721_B_lymphoblasts419.05
Adipocyte77.9
AdrenalCortex56.2
Adrenalgland46.45
Amygdala244.4
Appendix69.5
AtrioventricularNode17.3
BDCA4+_DentriticCells83
Bonemarrow43.5
BronchialEpithelialCells206.3
CD105+_Endothelial174.7
CD14+_Monocytes25.15
CD19+_BCells(neg._sel.)53.3
CD33+_Myeloid62.05
CD34+115.8
CD4+_Tcells82.1
CD56+_NKCells63.9
CD71+_EarlyErythroid55.3
CD8+_Tcells91.95
CardiacMyocytes183.8
Caudatenucleus91.95
Cerebellum60.55
CerebellumPeduncles56.4
CiliaryGanglion17.45
CingulateCortex126.1
Colorectaladenocarcinoma108.1
DorsalRootGanglion40.55
FetalThyroid40.6
Fetalbrain68.55
Fetalliver56.6
Fetallung41
GlobusPallidus44.95
Heart62.6
Hypothalamus234.95
Kidney60.75
Leukemia_chronicMyelogenousK-562145.5
Leukemia_promyelocytic-HL-60258.05
Leukemialymphoblastic(MOLT-4)27.9
Liver28.15
Lung41.25
Lymphnode65.9
Lymphoma_burkitts(Daudi)237.55
Lymphoma_burkitts(Raji)164.1
MedullaOblongata113.2
OccipitalLobe146.65
OlfactoryBulb52.4
Ovary30.25
Pancreas42.65
PancreaticIslet89.15
ParietalLobe77.5
Pituitary217.75
Placenta184.6
Pons75.15
PrefrontalCortex247.65
Prostate121.9
Salivarygland50.9
SkeletalMuscle51.6
Skin44.45
SmoothMuscle342.6
Spinalcord183.55
SubthalamicNucleus74.5
SuperiorCervicalGanglion62.9
TemporalLobe93.35
Testis203.7
TestisGermCell446.1
TestisIntersitial213.05
TestisLeydigCell196.05
TestisSeminiferousTubule164.3
Thalamus151.6
Thymus25.05
Thyroid213.4
Tongue27.15
Tonsil43.2
Trachea67.4
TrigeminalGanglion87.2
Uterus131.85
UterusCorpus30.7
WholeBlood32.95
Wholebrain184.1
colon115.4
pineal_day147.04
pineal_night145.74
retina159.725
small_intestine105.2
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P119002
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala9.01 ± 0.38
Basal Forebrain8.98 ± 0.26
Basal Part of Pons9.33 ± 0.2
Cerebellar Cortex9.12 ± 0.18
Cerebellar Nuclei9.35 ± 0.23
Claustrum9.55 ± 0.23
Epithalamus8.97 ± 0.37
Frontal Lobe9.41 ± 0.31
Globus Pallidus9.51 ± 0.24
Hypothalamus9.08 ± 0.3
Insula9.3 ± 0.24
Limbic Lobe9.46 ± 0.37
Mesencephalon9.22 ± 0.36
Myelencephalon9.22 ± 0.32
Occipital Lobe8.96 ± 0.33
Parietal Lobe9.34 ± 0.3
Pontine Tegmentum9.26 ± 0.33
Striatum8.7 ± 0.32
Subthalamus9.47 ± 0.34
Temporal Lobe9.32 ± 0.3
Thalamus9.19 ± 0.26
White Matter10.14 ± 0.26
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
2810405J04RikCBCerebellum7.25
9.2
2810405J04RikCTXCerebral cortex2.21
2.02
2810405J04RikHIPHippocampal region2.87
2.62
2810405J04RikHPFHippocampal formation3.56
3.25
2810405J04RikHYHypothalamus1.3
1.34
2810405J04RikLSXLateral septal complex0.16
0.16
2810405J04RikMBMidbrain1.16
1.28
2810405J04RikMYMedulla4.42
4.58
2810405J04RikOLFOlfactory bulb7.55
8.84
2810405J04RikPPons1.89
2.08
2810405J04RikPALPallidum1.16
1.15
2810405J04RikRHPRetrohippocampal region4.49
4.24
2810405J04RiksAMYStriatum-like amygdalar nuclei2.93
2.33
2810405J04RikSTRStriatum1.7
1.44
2810405J04RikSTRdStriatum dorsal region1.31
1.24
2810405J04RikSTRvStriatum ventral region2.85
1.99
2810405J04RikTHThalamus1.6
1.3
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00063946 14 134 147 AQEGGGSEVFQELK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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