Annotation Detail for SIN3A
Basic Information Top
| Gene Symbol: | SIN3A ( DKFZp434K2235,FLJ90319,KIAA0700 ) |
|---|---|
| Gene Full Name: | SIN3 homolog A, transcription regulator (yeast) |
| Band: | 15q24.2 |
| Quick Links | Entrez ID:25942; OMIM: 607776; Uniprot ID:SIN3A_HUMAN; ENSEMBL ID: ENSG00000169375; HGNC ID: 19353 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.513039
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 8 / 70761 | 113 |  |
| blastocyst | 6 / 62319 | 96 | |
| fetus | 23 / 564012 | 40 |  |
| neonate | 1 / 31097 | 32 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 3 / 55556 | 53 | |
| adult | 117 / 1939121 | 60 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 18 / 94178 | 191 | |
| cervical tumor | 2 / 34366 | 58 | |
| chondrosarcoma | 3 / 82823 | 36 | |
| colorectal tumor | 15 / 114246 | 131 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 4 / 119369 | 33 | |
| germ cell tumor | 28 / 263845 | 106 | |
| glioma | 2 / 106883 | 18 | |
| head and neck tumor | 14 / 136302 | 102 | |
| kidney tumor | 6 / 68959 | 87 | |
| leukemia | 4 / 95842 | 41 | |
| liver tumor | 6 / 96359 | 62 | |
| lung tumor | 1 / 103127 | 9 |  |
| lymphoma | 6 / 71755 | 83 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 139 / 3360307 | 41 | |
| ovarian tumor | 5 / 76682 | 65 | |
| pancreatic tumor | 8 / 104616 | 76 | |
| primitive neuroectodermal tumor of the CNS | 4 / 125680 | 31 | |
| prostate cancer | 1 / 102680 | 9 | |
| retinoblastoma | 9 / 46356 | 194 | |
| skin tumor | 12 / 124949 | 96 | |
| soft tissue/muscle tissue tumor | 16 / 125191 | 127 | |
| uterine tumor | 4 / 90257 | 44 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 2 / 33197 | 60 | |
| ascites | 3 / 40015 | 74 | |
| bladder | 1 / 29757 | 33 | |
| blood | 5 / 123478 | 40 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 7 / 48801 | 143 | |
| brain | 39 / 1100989 | 35 | |
| cervix | 2 / 48171 | 41 | |
| connective tissue | 7 / 149255 | 46 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 17 / 215722 | 78 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 17 / 211054 | 80 | |
| heart | 2 / 89626 | 22 | |
| intestine | 16 / 234472 | 68 | |
| kidney | 12 / 211777 | 56 | |
| larynx | 0 / 24145 | 0 | |
| liver | 7 / 207743 | 33 | |
| lung | 16 / 336974 | 47 | |
| lymph | 3 / 44270 | 67 | |
| lymph node | 9 / 91610 | 98 | |
| mammary gland | 19 / 153271 | 123 | |
| mouth | 9 / 67052 | 134 | |
| muscle | 7 / 107715 | 64 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 8 / 102051 | 78 | |
| pancreas | 9 / 214812 | 41 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 17 / 280825 | 60 | |
| prostate | 3 / 189345 | 15 | |
| salivary gland | 3 / 20155 | 148 | |
| skin | 13 / 210574 | 61 | |
| spleen | 5 / 53952 | 92 | |
| stomach | 0 / 96619 | 0 | |
| testis | 29 / 330442 | 87 | |
| thymus | 3 / 81131 | 36 | |
| thyroid | 4 / 47473 | 84 | |
| tonsil | 1 / 16999 | 58 | |
| trachea | 7 / 52413 | 133 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 17 / 232878 | 72 | |
| vascular | 2 / 51780 | 38 | |
Microarray in - Probe name: A_24_P304760
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.09 ± 0.59 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.75 ± 0.52 | |
| Basal Part of Pons | 4.41 ± 0.42 | |
| Cerebellar Cortex | 4.88 ± 0.38 | |
| Cerebellar Nuclei | 4.13 ± 0.44 | |
| Claustrum | 5.13 ± 0.72 | |
| Epithalamus | 4.97 ± 0.29 | |
| Frontal Lobe | 4.52 ± 0.47 | |
| Globus Pallidus | 3.98 ± 0.5 | |
| Hypothalamus | 4.76 ± 0.35 | |
| Insula | 4.73 ± 0.47 | |
| Limbic Lobe | 4.85 ± 0.43 | |
| Mesencephalon | 4.66 ± 0.43 | |
| Myelencephalon | 4.71 ± 0.51 | |
| Occipital Lobe | 4.72 ± 0.42 | |
| Parietal Lobe | 4.57 ± 0.52 | |
| Pontine Tegmentum | 4.52 ± 0.55 | |
| Striatum | 4.56 ± 0.39 | |
| Subthalamus | 4.12 ± 0.46 | |
| Temporal Lobe | 4.77 ± 0.45 | |
| Thalamus | 4.4 ± 0.52 | |
| White Matter | 3.49 ± 0.86 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Sin3a | CB | Cerebellum | 0 | |
| 0 | | |||
| Sin3a | CTX | Cerebral cortex | 0 | |
| 0 | | |||
| Sin3a | HIP | Hippocampal region | 0 | |
| 0 | | |||
| Sin3a | HPF | Hippocampal formation | 0 | |
| 0 | | |||
| Sin3a | HY | Hypothalamus | 0 | |
| 0 | | |||
| Sin3a | LSX | Lateral septal complex | 0 | |
| 0 | | |||
| Sin3a | MB | Midbrain | 0 | |
| 0 | | |||
| Sin3a | MY | Medulla | 0 | |
| 0 | | |||
| Sin3a | OLF | Olfactory bulb | 0 | |
| 0 | | |||
| Sin3a | P | Pons | 0 | |
| 0 | | |||
| Sin3a | PAL | Pallidum | 0 | |
| 0 | | |||
| Sin3a | RHP | Retrohippocampal region | 0 | |
| 0 | | |||
| Sin3a | sAMY | Striatum-like amygdalar nuclei | 0 | |
| 0 | | |||
| Sin3a | STR | Striatum | 0 | |
| 0 | | |||
| Sin3a | STRd | Striatum dorsal region | 0 | |
| 0 | | |||
| Sin3a | STRv | Striatum ventral region | 0 | |
| 0 | | |||
| Sin3a | TH | Thalamus | 0 | |
| 0 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00042879 | 14 | 1155 | 1168 | TMENVDSLDKLECR | Peptide Atlas |