Annotation Detail for C20orf194
Basic Information Top
| Gene Symbol: | C20orf194 ( DKFZp434N061,MGC117480,MGC141683 ) |
|---|---|
| Gene Full Name: | chromosome 20 open reading frame 194 |
| Band: | 20p13 |
| Quick Links | Entrez ID:25943; OMIM: NA; Uniprot ID:CT194_HUMAN; ENSEMBL ID: ENSG00000088854; HGNC ID: 17721 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.516853
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 7 / 70761 | 98 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 36 / 564012 | 63 | |
| neonate | 0 / 31097 | 0 | |
| infant | 1 / 23620 | 42 |  |
| juvenile | 2 / 55556 | 35 | |
| adult | 66 / 1939121 | 34 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 2 / 82823 | 24 | |
| colorectal tumor | 1 / 114246 | 8 |  |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 1 / 119369 | 8 | |
| germ cell tumor | 7 / 263845 | 26 | |
| glioma | 4 / 106883 | 37 | |
| head and neck tumor | 4 / 136302 | 29 | |
| kidney tumor | 3 / 68959 | 43 | |
| leukemia | 1 / 95842 | 10 | |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 4 / 97250 | 41 | |
| normal | 138 / 3360307 | 41 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 2 / 125680 | 15 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 5 / 124949 | 40 | |
| soft tissue/muscle tissue tumor | 4 / 125191 | 31 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 2 / 13106 | 152 | |
| adrenal gland | 2 / 33197 | 60 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 1 / 29757 | 33 | |
| blood | 1 / 123478 | 8 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 48 / 1100989 | 43 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 4 / 149255 | 26 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 11 / 215722 | 50 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 16 / 211054 | 75 | |
| heart | 5 / 89626 | 55 | |
| intestine | 4 / 234472 | 17 | |
| kidney | 10 / 211777 | 47 | |
| larynx | 2 / 24145 | 82 | |
| liver | 1 / 207743 | 4 | |
| lung | 24 / 336974 | 71 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 1 / 91610 | 10 | |
| mammary gland | 4 / 153271 | 26 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 4 / 107715 | 37 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 1 / 214812 | 4 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 8 / 280825 | 28 | |
| prostate | 2 / 189345 | 10 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 7 / 210574 | 33 | |
| spleen | 3 / 53952 | 55 | |
| stomach | 1 / 96619 | 10 | |
| testis | 13 / 330442 | 39 | |
| thymus | 2 / 81131 | 24 | |
| thyroid | 5 / 47473 | 105 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 4 / 232878 | 17 | |
| vascular | 2 / 51780 | 38 | |
Microarray in - Probe name: CUST_7120_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 6.17 ± 0.44 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.98 ± 0.31 | |
| Basal Part of Pons | 5.6 ± 0.53 | |
| Cerebellar Cortex | 5.37 ± 0.47 | |
| Cerebellar Nuclei | 5.62 ± 0.43 | |
| Claustrum | 6.39 ± 0.94 | |
| Epithalamus | 5.64 ± 0.46 | |
| Frontal Lobe | 5.57 ± 0.47 | |
| Globus Pallidus | 6.19 ± 0.28 | |
| Hypothalamus | 5.8 ± 0.38 | |
| Insula | 5.59 ± 0.32 | |
| Limbic Lobe | 6.02 ± 0.5 | |
| Mesencephalon | 5.82 ± 0.58 | |
| Myelencephalon | 5.82 ± 0.48 | |
| Occipital Lobe | 6.09 ± 0.47 | |
| Parietal Lobe | 5.82 ± 0.52 | |
| Pontine Tegmentum | 5.73 ± 0.65 | |
| Striatum | 6.22 ± 0.46 | |
| Subthalamus | 5.34 ± 0.15 | |
| Temporal Lobe | 5.69 ± 0.48 | |
| Thalamus | 5.65 ± 0.39 | |
| White Matter | 6.96 ± 0.4 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| 4930402H24Rik | CB | Cerebellum | 55.88 | |
| 100 | | |||
| 4930402H24Rik | CTX | Cerebral cortex | 100 | |
| 96.27 | | |||
| 4930402H24Rik | HIP | Hippocampal region | 63.8 | |
| 86.34 | | |||
| 4930402H24Rik | HPF | Hippocampal formation | 76.47 | |
| 86.57 | | |||
| 4930402H24Rik | HY | Hypothalamus | 100 | |
| 98.05 | | |||
| 4930402H24Rik | LSX | Lateral septal complex | 100 | |
| 100 | | |||
| 4930402H24Rik | MB | Midbrain | 70.24 | |
| 69.03 | | |||
| 4930402H24Rik | MY | Medulla | 100 | |
| 100 | | |||
| 4930402H24Rik | OLF | Olfactory bulb | 100 | |
| 100 | | |||
| 4930402H24Rik | P | Pons | 80.69 | |
| 84.27 | | |||
| 4930402H24Rik | PAL | Pallidum | 100 | |
| 100 | | |||
| 4930402H24Rik | RHP | Retrohippocampal region | 100 | |
| 91.4 | | |||
| 4930402H24Rik | sAMY | Striatum-like amygdalar nuclei | 87.99 | |
| 72.48 | | |||
| 4930402H24Rik | STR | Striatum | 93.51 | |
| 77.84 | | |||
| 4930402H24Rik | STRd | Striatum dorsal region | 83.03 | |
| 68.99 | | |||
| 4930402H24Rik | STRv | Striatum ventral region | 100 | |
| 87.17 | | |||
| 4930402H24Rik | TH | Thalamus | 100 | |
| 100 | |