AutismKB 2.0

Annotation Detail for TMEM87A


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Basic Information Top
Gene Symbol:TMEM87A ( DKFZp564G2022 )
Gene Full Name: transmembrane protein 87A
Band: 15q15.1
Quick LinksEntrez ID:25963; OMIM: NA; Uniprot ID:TM87A_HUMAN; ENSEMBL ID: ENSG00000103978; HGNC ID: 24522
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body5 / 7076170
blastocyst3 / 6231948
fetus68 / 564012120
neonate7 / 31097225
infant3 / 23620127
juvenile11 / 55556197
adult231 / 1939121119
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor2 / 12794156
bladder carcinoma4 / 17475228
breast (mammary gland) tumor20 / 94178212
cervical tumor5 / 34366145
chondrosarcoma13 / 82823156
colorectal tumor5 / 11424643
esophageal tumor10 / 17290578
gastrointestinal tumor12 / 119369100
germ cell tumor41 / 263845155
glioma13 / 106883121
head and neck tumor24 / 136302176
kidney tumor8 / 68959116
leukemia2 / 9584220
liver tumor21 / 96359217
lung tumor5 / 10312748
lymphoma3 / 7175541
non-neoplasia12 / 97250123
normal487 / 3360307144
ovarian tumor8 / 76682104
pancreatic tumor8 / 10461676
primitive neuroectodermal tumor of the CNS15 / 125680119
prostate cancer8 / 10268077
retinoblastoma4 / 4635686
skin tumor5 / 12494940
soft tissue/muscle tissue tumor3 / 12519123
uterine tumor9 / 9025799
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland4 / 33197120
ascites9 / 40015224
bladder9 / 29757302
blood10 / 12347880
bone6 / 7165583
bone marrow0 / 488010 
brain182 / 1100989165
cervix6 / 48171124
connective tissue32 / 149255214
ear3 / 16212185
embryonic tissue12 / 21572255
esophagus10 / 20209494
eye11 / 21105452
heart18 / 89626200
intestine16 / 23447268
kidney52 / 211777245
larynx1 / 2414541
liver23 / 207743110
lung50 / 336974148
lymph0 / 442700 
lymph node7 / 9161076
mammary gland27 / 153271176
mouth19 / 67052283
muscle8 / 10771574
nerve2 / 15768126
ovary10 / 10205197
pancreas12 / 21481255
parathyroid8 / 20539389
pharynx16 / 41328387
pituitary gland0 / 165850 
placenta34 / 280825121
prostate35 / 189345184
salivary gland1 / 2015549
skin31 / 210574147
spleen10 / 53952185
stomach8 / 9661982
testis69 / 330442208
thymus6 / 8113173
thyroid9 / 47473189
tonsil0 / 169990 
trachea17 / 52413324
umbilical cord0 / 136800 
uterus38 / 232878163
vascular16 / 51780308
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 212204_at
Cell line Expression level Expression bar
721_B_lymphoblasts132.05
Adipocyte55.4
AdrenalCortex31.3
Adrenalgland30.9
Amygdala121.6
Appendix69.65
AtrioventricularNode26
BDCA4+_DentriticCells384.15
Bonemarrow28.75
BronchialEpithelialCells271.15
CD105+_Endothelial122
CD14+_Monocytes329
CD19+_BCells(neg._sel.)361.45
CD33+_Myeloid386.8
CD34+380.25
CD4+_Tcells403.45
CD56+_NKCells472.85
CD71+_EarlyErythroid23.2
CD8+_Tcells315.8
CardiacMyocytes54.25
Caudatenucleus73.65
Cerebellum5.45
CerebellumPeduncles28.25
CiliaryGanglion21.95
CingulateCortex51.2
Colorectaladenocarcinoma81.75
DorsalRootGanglion39.2
FetalThyroid222.25
Fetalbrain68.35
Fetalliver21.1
Fetallung245.85
GlobusPallidus30.1
Heart8.6
Hypothalamus238
Kidney7.5
Leukemia_chronicMyelogenousK-56267.65
Leukemia_promyelocytic-HL-6052.45
Leukemialymphoblastic(MOLT-4)68.75
Liver8.7
Lung85.15
Lymphnode102.65
Lymphoma_burkitts(Daudi)16.35
Lymphoma_burkitts(Raji)66.4
MedullaOblongata57.5
OccipitalLobe105.05
OlfactoryBulb186.1
Ovary39.4
Pancreas105.7
PancreaticIslet116.8
ParietalLobe97.75
Pituitary80.85
Placenta293.1
Pons32.65
PrefrontalCortex110.75
Prostate391.35
Salivarygland88.9
SkeletalMuscle7.7
Skin63.6
SmoothMuscle72.8
Spinalcord262.05
SubthalamicNucleus31.6
SuperiorCervicalGanglion20.9
TemporalLobe41.25
Testis33.2
TestisGermCell298.3
TestisIntersitial82.55
TestisLeydigCell96.9
TestisSeminiferousTubule95.05
Thalamus116.95
Thymus36.7
Thyroid358.45
Tongue87.2
Tonsil67.3
Trachea106.85
TrigeminalGanglion32.45
Uterus211.6
UterusCorpus64.6
WholeBlood126.15
Wholebrain45.25
colon60.25
pineal_day115.18
pineal_night114.58
retina140.475
small_intestine19.7
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_6292_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala7.71 ± 0.31
Basal Forebrain8.14 ± 0.37
Basal Part of Pons7.88 ± 0.36
Cerebellar Cortex7.76 ± 0.15
Cerebellar Nuclei8.56 ± 0.35
Claustrum8.19 ± 0.31
Epithalamus7.82 ± 0.46
Frontal Lobe7.88 ± 0.39
Globus Pallidus8.77 ± 0.25
Hypothalamus8.11 ± 0.19
Insula7.67 ± 0.24
Limbic Lobe7.77 ± 0.34
Mesencephalon8.01 ± 0.43
Myelencephalon7.97 ± 0.33
Occipital Lobe7.93 ± 0.32
Parietal Lobe7.91 ± 0.34
Pontine Tegmentum8 ± 0.32
Striatum8.12 ± 0.32
Subthalamus8.17 ± 0.32
Temporal Lobe7.83 ± 0.28
Thalamus8.17 ± 0.24
White Matter9.6 ± 0.43
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Tmem87aCBCerebellum0.57
0.7
Tmem87aCTXCerebral cortex1.24
0.88
Tmem87aHIPHippocampal region5.28
4.8
Tmem87aHPFHippocampal formation3.58
3.03
Tmem87aHYHypothalamus0.3
0.2
Tmem87aLSXLateral septal complex0.04
0
Tmem87aMBMidbrain0.66
0.73
Tmem87aMYMedulla2.11
2.39
Tmem87aOLFOlfactory bulb3.77
2.73
Tmem87aPPons2.03
2.67
Tmem87aPALPallidum0.23
0.15
Tmem87aRHPRetrohippocampal region1.03
0.82
Tmem87asAMYStriatum-like amygdalar nuclei1.1
0.72
Tmem87aSTRStriatum0.35
0.24
Tmem87aSTRdStriatum dorsal region0.15
0.12
Tmem87aSTRvStriatum ventral region0.83
0.5
Tmem87aTHThalamus0.63
0.49
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00043329 20 285 304 YKGESVQGALILAELLSAVK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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