AutismKB 2.0

Annotation Detail for RNF167


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Basic Information Top
Gene Symbol:RNF167 ( 5730408C10Rik,DKFZp566H073,RING105 )
Gene Full Name: ring finger protein 167
Band: 17p13.2
Quick LinksEntrez ID:26001; OMIM: 610431; Uniprot ID:RN167_HUMAN; ENSEMBL ID: ENSG00000108523; HGNC ID: 24544
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body4 / 7076156
blastocyst9 / 62319144
fetus53 / 56401293
neonate0 / 310970 
infant5 / 23620211
juvenile9 / 55556161
adult254 / 1939121130
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor4 / 12794312
bladder carcinoma1 / 1747557
breast (mammary gland) tumor17 / 94178180
cervical tumor5 / 34366145
chondrosarcoma13 / 82823156
colorectal tumor7 / 11424661
esophageal tumor3 / 17290173
gastrointestinal tumor11 / 11936992
germ cell tumor32 / 263845121
glioma22 / 106883205
head and neck tumor4 / 13630229
kidney tumor11 / 68959159
leukemia16 / 95842166
liver tumor9 / 9635993
lung tumor8 / 10312777
lymphoma18 / 71755250
non-neoplasia6 / 9725061
normal372 / 3360307110
ovarian tumor10 / 76682130
pancreatic tumor16 / 104616152
primitive neuroectodermal tumor of the CNS34 / 125680270
prostate cancer17 / 102680165
retinoblastoma8 / 46356172
skin tumor11 / 12494988
soft tissue/muscle tissue tumor16 / 125191127
uterine tumor16 / 90257177
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland7 / 33197210
ascites0 / 400150 
bladder1 / 2975733
blood18 / 123478145
bone17 / 71655237
bone marrow13 / 48801266
brain131 / 1100989118
cervix12 / 48171249
connective tissue9 / 14925560
ear0 / 162120 
embryonic tissue19 / 21572288
esophagus3 / 20209148
eye36 / 211054170
heart5 / 8962655
intestine25 / 234472106
kidney22 / 211777103
larynx0 / 241450 
liver14 / 20774367
lung45 / 336974133
lymph7 / 44270158
lymph node20 / 91610218
mammary gland19 / 153271123
mouth1 / 6705214
muscle9 / 10771583
nerve0 / 157680 
ovary17 / 102051166
pancreas20 / 21481293
parathyroid2 / 2053997
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta38 / 280825135
prostate29 / 189345153
salivary gland0 / 201550 
skin25 / 210574118
spleen3 / 5395255
stomach14 / 96619144
testis31 / 33044293
thymus8 / 8113198
thyroid3 / 4747363
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord0 / 136800 
uterus29 / 232878124
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 212047_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts74.5
Adipocyte49.15
AdrenalCortex45
Adrenalgland58.7
Amygdala27.25
Appendix33.7
AtrioventricularNode13.2
BDCA4+_DentriticCells58.25
Bonemarrow64
BronchialEpithelialCells61.85
CD105+_Endothelial44.85
CD14+_Monocytes106.15
CD19+_BCells(neg._sel.)76.95
CD33+_Myeloid61.25
CD34+63.1
CD4+_Tcells85.1
CD56+_NKCells86.85
CD71+_EarlyErythroid69.9
CD8+_Tcells85.45
CardiacMyocytes34.7
Caudatenucleus46.35
Cerebellum48.55
CerebellumPeduncles45.65
CiliaryGanglion11.2
CingulateCortex45.65
Colorectaladenocarcinoma101.25
DorsalRootGanglion21.9
FetalThyroid46.45
Fetalbrain32.2
Fetalliver32.4
Fetallung35.3
GlobusPallidus24.1
Heart79.95
Hypothalamus40.5
Kidney49.15
Leukemia_chronicMyelogenousK-56233.2
Leukemia_promyelocytic-HL-6033.65
Leukemialymphoblastic(MOLT-4)43.3
Liver81.05
Lung55.6
Lymphnode41.4
Lymphoma_burkitts(Daudi)62.25
Lymphoma_burkitts(Raji)38.3
MedullaOblongata40.4
OccipitalLobe57.05
OlfactoryBulb39.5
Ovary30.3
Pancreas34.85
PancreaticIslet45.8
ParietalLobe43.9
Pituitary58.55
Placenta56.65
Pons27.15
PrefrontalCortex45.45
Prostate52.15
Salivarygland29.3
SkeletalMuscle29.6
Skin21.2
SmoothMuscle47.7
Spinalcord49.6
SubthalamicNucleus37.55
SuperiorCervicalGanglion13.4
TemporalLobe40.15
Testis76.6
TestisGermCell35.1
TestisIntersitial26.25
TestisLeydigCell37.4
TestisSeminiferousTubule36.45
Thalamus37.4
Thymus60.7
Thyroid89.75
Tongue28.6
Tonsil37.45
Trachea36.65
TrigeminalGanglion18.4
Uterus27.9
UterusCorpus29.6
WholeBlood81.55
Wholebrain49.7
colon51.55
pineal_day54.72
pineal_night43.7
retina50.6
small_intestine57.35
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P344295
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala4.25 ± 0.58
Basal Forebrain4.45 ± 0.37
Basal Part of Pons4.87 ± 0.35
Cerebellar Cortex4.51 ± 0.51
Cerebellar Nuclei4.35 ± 0.44
Claustrum4.36 ± 0.82
Epithalamus4.53 ± 0.28
Frontal Lobe4.61 ± 0.46
Globus Pallidus4.24 ± 0.62
Hypothalamus3.93 ± 0.61
Insula4.4 ± 0.35
Limbic Lobe4.39 ± 0.47
Mesencephalon4.41 ± 0.51
Myelencephalon4.46 ± 0.46
Occipital Lobe4.12 ± 0.39
Parietal Lobe4.4 ± 0.41
Pontine Tegmentum4.4 ± 0.53
Striatum4.18 ± 0.47
Subthalamus4.5 ± 0.08
Temporal Lobe4.55 ± 0.45
Thalamus4.62 ± 0.54
White Matter5.36 ± 0.2
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Rnf167CBCerebellum26.75
37.14
Rnf167CTXCerebral cortex64.92
55.25
Rnf167HIPHippocampal region68.95
100
Rnf167HPFHippocampal formation73.48
100
Rnf167HYHypothalamus12.77
12.34
Rnf167LSXLateral septal complex5.76
4.35
Rnf167MBMidbrain10
11.4
Rnf167MYMedulla19.5
23.73
Rnf167OLFOlfactory bulb71.89
70.4
Rnf167PPons15.57
18.84
Rnf167PALPallidum20.58
20.88
Rnf167RHPRetrohippocampal region85.06
80.91
Rnf167sAMYStriatum-like amygdalar nuclei74.49
65.05
Rnf167STRStriatum47.44
37.89
Rnf167STRdStriatum dorsal region46.31
35.41
Rnf167STRvStriatum ventral region53.1
44.17
Rnf167THThalamus15.13
14.2
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00043097 11 245 255 VLPCAHAYHSR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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