Annotation Detail for C2CD3
Basic Information Top
| Gene Symbol: | C2CD3 ( DKFZp586P0123,FLJ34770 ) |
|---|---|
| Gene Full Name: | C2 calcium-dependent domain containing 3 |
| Band: | 11q13.4 |
| Quick Links | Entrez ID:26005; OMIM: NA; Uniprot ID:C2CD3_HUMAN; ENSEMBL ID: ENSG00000168014; HGNC ID: 24564 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.694798
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 1 / 62319 | 16 | |
| fetus | 21 / 564012 | 37 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 45 / 1939121 | 23 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 1 / 94178 | 10 |  |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 10 / 114246 | 87 |  |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 1 / 263845 | 3 | |
| glioma | 1 / 106883 | 9 | |
| head and neck tumor | 2 / 136302 | 14 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 63 / 3360307 | 18 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 2 / 125191 | 15 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 13 / 1100989 | 11 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 1 / 149255 | 6 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 5 / 215722 | 23 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 2 / 211054 | 9 | |
| heart | 0 / 89626 | 0 | |
| intestine | 14 / 234472 | 59 | |
| kidney | 1 / 211777 | 4 | |
| larynx | 1 / 24145 | 41 | |
| liver | 0 / 207743 | 0 | |
| lung | 1 / 336974 | 2 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 4 / 91610 | 43 | |
| mammary gland | 5 / 153271 | 32 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 5 / 280825 | 17 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 2 / 210574 | 9 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 3 / 96619 | 31 | |
| testis | 10 / 330442 | 30 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 1 / 232878 | 4 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: A_24_P238215
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.04 ± 0.71 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 3.82 ± 0.32 | |
| Basal Part of Pons | 3.69 ± 0.6 | |
| Cerebellar Cortex | 4.27 ± 0.32 | |
| Cerebellar Nuclei | 3.89 ± 0.39 | |
| Claustrum | 3.77 ± 0.68 | |
| Epithalamus | 4.16 ± 0.41 | |
| Frontal Lobe | 3.83 ± 0.57 | |
| Globus Pallidus | 3.84 ± 0.55 | |
| Hypothalamus | 3.59 ± 0.82 | |
| Insula | 3.69 ± 0.44 | |
| Limbic Lobe | 3.93 ± 0.54 | |
| Mesencephalon | 3.89 ± 0.69 | |
| Myelencephalon | 3.91 ± 0.61 | |
| Occipital Lobe | 4.37 ± 0.51 | |
| Parietal Lobe | 3.86 ± 0.57 | |
| Pontine Tegmentum | 3.92 ± 0.6 | |
| Striatum | 3.67 ± 0.61 | |
| Subthalamus | 3.44 ± 0.58 | |
| Temporal Lobe | 3.83 ± 0.62 | |
| Thalamus | 3.79 ± 0.62 | |
| White Matter | 4.52 ± 0.31 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| AU020772 | CB | Cerebellum | 2.25 | |
| 2.38 | | |||
| AU020772 | CTX | Cerebral cortex | 4.3 | |
| 2.87 | | |||
| AU020772 | HIP | Hippocampal region | 2.4 | |
| 2.1 | | |||
| AU020772 | HPF | Hippocampal formation | 2.46 | |
| 2.02 | | |||
| AU020772 | HY | Hypothalamus | 0.96 | |
| 0.79 | | |||
| AU020772 | LSX | Lateral septal complex | 0 | |
| 0 | | |||
| AU020772 | MB | Midbrain | 1.46 | |
| 1.49 | | |||
| AU020772 | MY | Medulla | 4.12 | |
| 4.55 | | |||
| AU020772 | OLF | Olfactory bulb | 4.44 | |
| 3.21 | | |||
| AU020772 | P | Pons | 3.72 | |
| 3.6 | | |||
| AU020772 | PAL | Pallidum | 3.92 | |
| 3.35 | | |||
| AU020772 | RHP | Retrohippocampal region | 2.56 | |
| 1.93 | | |||
| AU020772 | sAMY | Striatum-like amygdalar nuclei | 3.04 | |
| 2.71 | | |||
| AU020772 | STR | Striatum | 1.86 | |
| 1.33 | | |||
| AU020772 | STRd | Striatum dorsal region | 1.49 | |
| 1.08 | | |||
| AU020772 | STRv | Striatum ventral region | 3.1 | |
| 1.82 | | |||
| AU020772 | TH | Thalamus | 3.16 | |
| 2.25 | |