AutismKB 2.0

Annotation Detail for NELF


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Basic Information Top
Gene Symbol:NELF ( MGC125369 )
Gene Full Name: nasal embryonic LHRH factor
Band: 9q34.3
Quick LinksEntrez ID:26012; OMIM: 608137; Uniprot ID:NELF_HUMAN; ENSEMBL ID: ENSG00000165802; HGNC ID:
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body2 / 7076128
blastocyst6 / 6231996
fetus40 / 56401270
neonate0 / 310970 
infant3 / 23620127
juvenile4 / 5555671
adult147 / 193912175
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor2 / 9417821
cervical tumor5 / 34366145
chondrosarcoma16 / 82823193
colorectal tumor10 / 11424687
esophageal tumor2 / 17290115
gastrointestinal tumor30 / 119369251
germ cell tumor14 / 26384553
glioma21 / 106883196
head and neck tumor12 / 13630288
kidney tumor6 / 6895987
leukemia2 / 9584220
liver tumor12 / 96359124
lung tumor16 / 103127155
lymphoma1 / 7175513
non-neoplasia3 / 9725030
normal198 / 336030758
ovarian tumor4 / 7668252
pancreatic tumor6 / 10461657
primitive neuroectodermal tumor of the CNS20 / 125680159
prostate cancer3 / 10268029
retinoblastoma6 / 46356129
skin tumor5 / 12494940
soft tissue/muscle tissue tumor4 / 12519131
uterine tumor4 / 9025744
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites11 / 40015274
bladder0 / 297570 
blood2 / 12347816
bone12 / 71655167
bone marrow2 / 4880140
brain134 / 1100989121
cervix9 / 48171186
connective tissue4 / 14925526
ear0 / 162120 
embryonic tissue13 / 21572260
esophagus2 / 2020998
eye14 / 21105466
heart5 / 8962655
intestine28 / 234472119
kidney10 / 21177747
larynx3 / 24145124
liver14 / 20774367
lung28 / 33697483
lymph0 / 442700 
lymph node7 / 9161076
mammary gland3 / 15327119
mouth1 / 6705214
muscle0 / 1077150 
nerve5 / 15768317
ovary5 / 10205148
pancreas12 / 21481255
parathyroid2 / 2053997
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta6 / 28082521
prostate3 / 18934515
salivary gland7 / 20155347
skin8 / 21057437
spleen2 / 5395237
stomach21 / 96619217
testis9 / 33044227
thymus1 / 8113112
thyroid1 / 4747321
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord0 / 136800 
uterus11 / 23287847
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 221214_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts24.25
Adipocyte13.2
AdrenalCortex17.25
Adrenalgland10.3
Amygdala525.3
Appendix12.9
AtrioventricularNode11.55
BDCA4+_DentriticCells14.85
Bonemarrow9.6
BronchialEpithelialCells19.55
CD105+_Endothelial11.7
CD14+_Monocytes14.05
CD19+_BCells(neg._sel.)20.8
CD33+_Myeloid21.1
CD34+17.6
CD4+_Tcells27.35
CD56+_NKCells28.25
CD71+_EarlyErythroid12
CD8+_Tcells34.5
CardiacMyocytes15.6
Caudatenucleus52.8
Cerebellum10.65
CerebellumPeduncles16.5
CiliaryGanglion9.75
CingulateCortex229.25
Colorectaladenocarcinoma2982.7
DorsalRootGanglion10.4
FetalThyroid13.05
Fetalbrain78.6
Fetalliver10.65
Fetallung10.1
GlobusPallidus67
Heart17.3
Hypothalamus47.85
Kidney11.25
Leukemia_chronicMyelogenousK-56211.75
Leukemia_promyelocytic-HL-6016.05
Leukemialymphoblastic(MOLT-4)8.9
Liver21.55
Lung13.25
Lymphnode9.65
Lymphoma_burkitts(Daudi)11.95
Lymphoma_burkitts(Raji)120.75
MedullaOblongata143.2
OccipitalLobe130.7
OlfactoryBulb17.65
Ovary8.15
Pancreas10.45
PancreaticIslet14.85
ParietalLobe52.85
Pituitary19.5
Placenta7.45
Pons49.05
PrefrontalCortex484.8
Prostate22.75
Salivarygland10.3
SkeletalMuscle16.05
Skin9.6
SmoothMuscle15.35
Spinalcord95.7
SubthalamicNucleus85.95
SuperiorCervicalGanglion14.4
TemporalLobe195.6
Testis12.45
TestisGermCell10.85
TestisIntersitial11.55
TestisLeydigCell13.55
TestisSeminiferousTubule12.8
Thalamus20.05
Thymus9.85
Thyroid20.7
Tongue12.7
Tonsil12.15
Trachea10.4
TrigeminalGanglion19.55
Uterus10.95
UterusCorpus11.55
WholeBlood14.1
Wholebrain259.7
colon7.45
pineal_day27.82
pineal_night27.44
retina49.6
small_intestine9.75
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P32064
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.53 ± 0.79
Basal Forebrain5.98 ± 0.52
Basal Part of Pons6.23 ± 0.55
Cerebellar Cortex5.71 ± 0.47
Cerebellar Nuclei5.04 ± 0.72
Claustrum5.81 ± 0.64
Epithalamus6.68 ± 0.93
Frontal Lobe6.75 ± 0.8
Globus Pallidus5.7 ± 1.07
Hypothalamus5.25 ± 0.52
Insula7.03 ± 0.41
Limbic Lobe7.1 ± 0.64
Mesencephalon5.98 ± 0.62
Myelencephalon6.43 ± 0.79
Occipital Lobe5.83 ± 0.64
Parietal Lobe6.56 ± 0.77
Pontine Tegmentum6.32 ± 0.82
Striatum5.99 ± 1.09
Subthalamus5.53 ± 0.96
Temporal Lobe6.86 ± 0.57
Thalamus6.66 ± 0.63
White Matter4.03 ± 0.84
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
NelfCBCerebellum29.12
40.98
NelfCTXCerebral cortex100
100
NelfHIPHippocampal region100
100
NelfHPFHippocampal formation100
100
NelfHYHypothalamus31.89
27.54
NelfLSXLateral septal complex71.04
60.52
NelfMBMidbrain50.13
49.24
NelfMYMedulla57.26
62.91
NelfOLFOlfactory bulb100
100
NelfPPons58.01
61.77
NelfPALPallidum56.96
55.26
NelfRHPRetrohippocampal region100
100
NelfsAMYStriatum-like amygdalar nuclei93.25
77.12
NelfSTRStriatum86.42
69.88
NelfSTRdStriatum dorsal region89.43
72.68
NelfSTRvStriatum ventral region82.04
63.24
NelfTHThalamus100
100
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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