AutismKB 2.0

Annotation Detail for ATRNL1


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Basic Information Top
Gene Symbol:ATRNL1 ( ALP,FLJ45344,KIAA0534,bA338L11.1,bA454H24.1 )
Gene Full Name: attractin-like 1
Band: 10q25.3
Quick LinksEntrez ID:26033; OMIM: 612869; Uniprot ID:ATRN1_HUMAN; ENSEMBL ID: ENSG00000107518; HGNC ID: 29063
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus17 / 56401230
neonate0 / 310970 
infant2 / 2362084
juvenile3 / 5555653
adult29 / 193912114
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma0 / 174750 
breast (mammary gland) tumor3 / 9417831
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor1 / 2638453
glioma0 / 1068830 
head and neck tumor3 / 13630222
kidney tumor3 / 6895943
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor1 / 1031279
lymphoma2 / 7175527
non-neoplasia1 / 9725010
normal95 / 336030728
ovarian tumor1 / 7668213
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS5 / 12568039
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor2 / 12519115
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland1 / 3319730
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain46 / 110098941
cervix0 / 481710 
connective tissue1 / 1492556
ear0 / 162120 
embryonic tissue4 / 21572218
esophagus0 / 202090 
eye5 / 21105423
heart0 / 896260 
intestine1 / 2344724
kidney4 / 21177718
larynx0 / 241450 
liver1 / 2077434
lung1 / 3369742
lymph0 / 442700 
lymph node0 / 916100 
mammary gland3 / 15327119
mouth0 / 670520 
muscle1 / 1077159
nerve3 / 15768190
ovary2 / 10205119
pancreas4 / 21481218
parathyroid0 / 205390 
pharynx3 / 4132872
pituitary gland1 / 1658560
placenta2 / 2808257
prostate6 / 18934531
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach0 / 966190 
testis4 / 33044212
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus1 / 2328784
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 213744_at
Cell line Expression level Expression bar
721_B_lymphoblasts7.1
Adipocyte6.45
AdrenalCortex8.15
Adrenalgland5.75
Amygdala36.6
Appendix9.8
AtrioventricularNode8.35
BDCA4+_DentriticCells6.05
Bonemarrow6.85
BronchialEpithelialCells6.4
CD105+_Endothelial6.55
CD14+_Monocytes7.1
CD19+_BCells(neg._sel.)6.6
CD33+_Myeloid8.1
CD34+8.15
CD4+_Tcells6.7
CD56+_NKCells7.15
CD71+_EarlyErythroid6.4
CD8+_Tcells5.8
CardiacMyocytes14.8
Caudatenucleus7.05
Cerebellum5.45
CerebellumPeduncles8.55
CiliaryGanglion6.2
CingulateCortex49.9
Colorectaladenocarcinoma6.65
DorsalRootGanglion5.65
FetalThyroid6.65
Fetalbrain18.4
Fetalliver5.8
Fetallung5.35
GlobusPallidus38.95
Heart10.65
Hypothalamus7.35
Kidney6.3
Leukemia_chronicMyelogenousK-5626.25
Leukemia_promyelocytic-HL-605.7
Leukemialymphoblastic(MOLT-4)5.1
Liver11.7
Lung7.55
Lymphnode5.45
Lymphoma_burkitts(Daudi)8.65
Lymphoma_burkitts(Raji)9.9
MedullaOblongata36.5
OccipitalLobe74.2
OlfactoryBulb5.15
Ovary6.35
Pancreas5.45
PancreaticIslet7.1
ParietalLobe18.1
Pituitary8
Placenta6.6
Pons14.9
PrefrontalCortex96.85
Prostate8.05
Salivarygland5.7
SkeletalMuscle13.85
Skin6.25
SmoothMuscle7.3
Spinalcord7.05
SubthalamicNucleus67.85
SuperiorCervicalGanglion16.25
TemporalLobe67.25
Testis5.55
TestisGermCell5.8
TestisIntersitial6
TestisLeydigCell6.85
TestisSeminiferousTubule5.65
Thalamus28.05
Thymus5.2
Thyroid8.15
Tongue6.8
Tonsil6.65
Trachea5.45
TrigeminalGanglion7.45
Uterus5.7
UterusCorpus7.35
WholeBlood7.35
Wholebrain15.6
colon8
pineal_day8.68
pineal_night8.52
retina8.075
small_intestine6.45
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_32_P224047
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala8.23 ± 0.79
Basal Forebrain7.3 ± 0.61
Basal Part of Pons9.44 ± 0.3
Cerebellar Cortex7.27 ± 0.41
Cerebellar Nuclei7.56 ± 0.83
Claustrum8.49 ± 0.59
Epithalamus7.72 ± 0.39
Frontal Lobe8.37 ± 0.69
Globus Pallidus6.09 ± 1.59
Hypothalamus6.8 ± 1.01
Insula8.36 ± 0.34
Limbic Lobe8.27 ± 0.96
Mesencephalon7.4 ± 0.98
Myelencephalon8.03 ± 1.08
Occipital Lobe8.89 ± 0.63
Parietal Lobe8.72 ± 0.74
Pontine Tegmentum8.21 ± 0.54
Striatum7.75 ± 1.44
Subthalamus8.57 ± 0.53
Temporal Lobe8.43 ± 0.61
Thalamus8.53 ± 0.72
White Matter5.65 ± 1.27
Mouse Brain ISH
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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