Annotation Detail for UBXN7
Basic Information Top
| Gene Symbol: | UBXN7 ( KIAA0794,UBXD7 ) |
|---|---|
| Gene Full Name: | UBX domain protein 7 |
| Band: | 3q29 |
| Quick Links | Entrez ID:26043; OMIM: NA; Uniprot ID:UBXN7_HUMAN; ENSEMBL ID: ENSG00000163960; HGNC ID: 29119 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.518524
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 6 / 70761 | 84 |  |
| blastocyst | 5 / 62319 | 80 | |
| fetus | 29 / 564012 | 51 | |
| neonate | 0 / 31097 | 0 | |
| infant | 1 / 23620 | 42 |  |
| juvenile | 0 / 55556 | 0 | |
| adult | 66 / 1939121 | 34 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 3 / 94178 | 31 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 4 / 114246 | 35 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 5 / 119369 | 41 | |
| germ cell tumor | 10 / 263845 | 37 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 9 / 136302 | 66 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 1 / 95842 | 10 |  |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 2 / 103127 | 19 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 3 / 97250 | 30 | |
| normal | 110 / 3360307 | 32 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 4 / 125680 | 31 | |
| prostate cancer | 3 / 102680 | 29 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 2 / 124949 | 16 | |
| soft tissue/muscle tissue tumor | 6 / 125191 | 47 | |
| uterine tumor | 3 / 90257 | 33 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 0 / 29757 | 0 | |
| blood | 2 / 123478 | 16 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 27 / 1100989 | 24 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 2 / 149255 | 13 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 13 / 215722 | 60 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 4 / 211054 | 18 | |
| heart | 0 / 89626 | 0 | |
| intestine | 6 / 234472 | 25 | |
| kidney | 5 / 211777 | 23 | |
| larynx | 4 / 24145 | 165 | |
| liver | 3 / 207743 | 14 | |
| lung | 7 / 336974 | 20 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 2 / 91610 | 21 | |
| mammary gland | 10 / 153271 | 65 | |
| mouth | 4 / 67052 | 59 | |
| muscle | 6 / 107715 | 55 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 11 / 214812 | 51 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 6 / 280825 | 21 | |
| prostate | 9 / 189345 | 47 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 4 / 210574 | 18 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 3 / 96619 | 31 | |
| testis | 13 / 330442 | 39 | |
| thymus | 4 / 81131 | 49 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 1 / 13680 | 73 | |
| uterus | 11 / 232878 | 47 | |
| vascular | 2 / 51780 | 38 | |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 217100_s_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 25.55 | |
| Adipocyte | 4.8 | |
| AdrenalCortex | 5.2 | |
| Adrenalgland | 4.1 | |
| Amygdala | 6.3 | |
| Appendix | 5.2 | |
| AtrioventricularNode | 3.8 | |
| BDCA4+_DentriticCells | 6.05 | |
| Bonemarrow | 5 | |
| BronchialEpithelialCells | 4.8 | |
| CD105+_Endothelial | 5.35 | |
| CD14+_Monocytes | 5.7 | |
| CD19+_BCells(neg._sel.) | 9.5 | |
| CD33+_Myeloid | 22 | |
| CD34+ | 18.7 | |
| CD4+_Tcells | 31.85 | |
| CD56+_NKCells | 19.7 | |
| CD71+_EarlyErythroid | 5.4 | |
| CD8+_Tcells | 27.7 | |
| CardiacMyocytes | 6.5 | |
| Caudatenucleus | 4.6 | |
| Cerebellum | 4.2 | |
| CerebellumPeduncles | 7 | |
| CiliaryGanglion | 3.55 | |
| CingulateCortex | 5.25 | |
| Colorectaladenocarcinoma | 10.3 | |
| DorsalRootGanglion | 3.8 | |
| FetalThyroid | 4.45 | |
| Fetalbrain | 5.55 | |
| Fetalliver | 5.25 | |
| Fetallung | 6.2 | |
| GlobusPallidus | 3.7 | |
| Heart | 6.4 | |
| Hypothalamus | 5.7 | |
| Kidney | 4.05 | |
| Leukemia_chronicMyelogenousK-562 | 4.7 | |
| Leukemia_promyelocytic-HL-60 | 4.65 | |
| Leukemialymphoblastic(MOLT-4) | 4.2 | |
| Liver | 6.3 | |
| Lung | 5 | |
| Lymphnode | 4.25 | |
| Lymphoma_burkitts(Daudi) | 6.55 | |
| Lymphoma_burkitts(Raji) | 7.15 | |
| MedullaOblongata | 4.75 | |
| OccipitalLobe | 6.1 | |
| OlfactoryBulb | 4.1 | |
| Ovary | 3.35 | |
| Pancreas | 4.15 | |
| PancreaticIslet | 7.1 | |
| ParietalLobe | 5.35 | |
| Pituitary | 6.1 | |
| Placenta | 5.45 | |
| Pons | 4.9 | |
| PrefrontalCortex | 6.55 | |
| Prostate | 8.4 | |
| Salivarygland | 4.1 | |
| SkeletalMuscle | 5.65 | |
| Skin | 3.85 | |
| SmoothMuscle | 5.9 | |
| Spinalcord | 5.05 | |
| SubthalamicNucleus | 4.6 | |
| SuperiorCervicalGanglion | 6.4 | |
| TemporalLobe | 4.55 | |
| Testis | 4 | |
| TestisGermCell | 4.4 | |
| TestisIntersitial | 4.15 | |
| TestisLeydigCell | 4.75 | |
| TestisSeminiferousTubule | 4.45 | |
| Thalamus | 5.2 | |
| Thymus | 4.15 | |
| Thyroid | 6.1 | |
| Tongue | 4.9 | |
| Tonsil | 5 | |
| Trachea | 4.15 | |
| TrigeminalGanglion | 5 | |
| Uterus | 4.55 | |
| UterusCorpus | 4.55 | |
| WholeBlood | 5.75 | |
| Wholebrain | 3.85 | |
| colon | 5.25 | |
| pineal_day | 20.3 | |
| pineal_night | 31.02 | |
| retina | 6.475 | |
| small_intestine | 5.15 | |
- Probe name: A_23_P358221
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 3.94 ± 0.64 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.11 ± 0.42 | |
| Basal Part of Pons | 4.17 ± 0.64 | |
| Cerebellar Cortex | 4.5 ± 0.3 | |
| Cerebellar Nuclei | 3.87 ± 0.58 | |
| Claustrum | 3.67 ± 0.86 | |
| Epithalamus | 4.49 ± 0.7 | |
| Frontal Lobe | 4.14 ± 0.49 | |
| Globus Pallidus | 4.15 ± 0.58 | |
| Hypothalamus | 4.1 ± 0.54 | |
| Insula | 4.05 ± 0.35 | |
| Limbic Lobe | 3.79 ± 0.51 | |
| Mesencephalon | 4.18 ± 0.59 | |
| Myelencephalon | 4.04 ± 0.58 | |
| Occipital Lobe | 3.95 ± 0.59 | |
| Parietal Lobe | 4.1 ± 0.53 | |
| Pontine Tegmentum | 4.02 ± 0.5 | |
| Striatum | 3.73 ± 0.61 | |
| Subthalamus | 4.32 ± 0.34 | |
| Temporal Lobe | 4.05 ± 0.53 | |
| Thalamus | 4.13 ± 0.52 | |
| White Matter | 4.94 ± 0.32 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Ubxd7 | CB | Cerebellum | 13.9 | |
| 16.58 | | |||
| Ubxd7 | CTX | Cerebral cortex | 6.51 | |
| 5.22 | | |||
| Ubxd7 | HIP | Hippocampal region | 6.47 | |
| 6.35 | | |||
| Ubxd7 | HPF | Hippocampal formation | 5.41 | |
| 4.82 | | |||
| Ubxd7 | HY | Hypothalamus | 1.78 | |
| 1.3 | | |||
| Ubxd7 | LSX | Lateral septal complex | 2.6 | |
| 3.09 | | |||
| Ubxd7 | MB | Midbrain | 3.48 | |
| 3.86 | | |||
| Ubxd7 | MY | Medulla | 11.17 | |
| 12.65 | | |||
| Ubxd7 | OLF | Olfactory bulb | 9.44 | |
| 7.59 | | |||
| Ubxd7 | P | Pons | 4.36 | |
| 5.08 | | |||
| Ubxd7 | PAL | Pallidum | 3.01 | |
| 2.81 | | |||
| Ubxd7 | RHP | Retrohippocampal region | 3.87 | |
| 2.85 | | |||
| Ubxd7 | sAMY | Striatum-like amygdalar nuclei | 4.18 | |
| 4.11 | | |||
| Ubxd7 | STR | Striatum | 1.97 | |
| 1.86 | | |||
| Ubxd7 | STRd | Striatum dorsal region | 1.23 | |
| 1.25 | | |||
| Ubxd7 | STRv | Striatum ventral region | 2.95 | |
| 2.09 | | |||
| Ubxd7 | TH | Thalamus | 4.01 | |
| 3.5 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00063051 | 14 | 399 | 412 | ADGVVEGIDVNGPK | Peptide Atlas |