AutismKB 2.0

Annotation Detail for ZNF500


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Basic Information Top
Gene Symbol:ZNF500 ( ZKSCAN18 )
Gene Full Name: zinc finger protein 500
Band: 16p13.3
Quick LinksEntrez ID:26048; OMIM: NA; Uniprot ID:ZN500_HUMAN; ENSEMBL ID: ENSG00000103199; HGNC ID: 23716
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body2 / 7076128
blastocyst0 / 623190 
fetus26 / 56401246
neonate0 / 310970 
infant1 / 2362042
juvenile3 / 5555653
adult32 / 193912116
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor4 / 9417842
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor3 / 11936925
germ cell tumor19 / 26384572
glioma3 / 10688328
head and neck tumor4 / 13630229
kidney tumor1 / 6895914
leukemia4 / 9584241
liver tumor1 / 9635910
lung tumor3 / 10312729
lymphoma0 / 717550 
non-neoplasia2 / 9725020
normal106 / 336030731
ovarian tumor0 / 766820 
pancreatic tumor5 / 10461647
primitive neuroectodermal tumor of the CNS3 / 12568023
prostate cancer0 / 1026800 
retinoblastoma1 / 4635621
skin tumor1 / 1249498
soft tissue/muscle tissue tumor4 / 12519131
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland1 / 3319730
ascites0 / 400150 
bladder0 / 297570 
blood4 / 12347832
bone0 / 716550 
bone marrow2 / 4880140
brain71 / 110098964
cervix1 / 4817120
connective tissue1 / 1492556
ear0 / 162120 
embryonic tissue3 / 21572213
esophagus0 / 202090 
eye5 / 21105423
heart0 / 896260 
intestine3 / 23447212
kidney1 / 2117774
larynx0 / 241450 
liver1 / 2077434
lung12 / 33697435
lymph0 / 442700 
lymph node0 / 916100 
mammary gland5 / 15327132
mouth4 / 6705259
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas5 / 21481223
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta10 / 28082535
prostate0 / 1893450 
salivary gland0 / 201550 
skin1 / 2105744
spleen3 / 5395255
stomach2 / 9661920
testis26 / 33044278
thymus4 / 8113149
thyroid0 / 474730 
tonsil0 / 169990 
trachea15 / 52413286
umbilical cord0 / 136800 
uterus8 / 23287834
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 213639_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts6.95
Adipocyte5.35
AdrenalCortex5.65
Adrenalgland4.5
Amygdala5.7
Appendix5.5
AtrioventricularNode5.35
BDCA4+_DentriticCells8.45
Bonemarrow5.6
BronchialEpithelialCells5.05
CD105+_Endothelial6.15
CD14+_Monocytes6.1
CD19+_BCells(neg._sel.)5.95
CD33+_Myeloid7
CD34+8.65
CD4+_Tcells17.05
CD56+_NKCells8.5
CD71+_EarlyErythroid5.05
CD8+_Tcells27.85
CardiacMyocytes6.7
Caudatenucleus4.8
Cerebellum4.4
CerebellumPeduncles6.2
CiliaryGanglion3.95
CingulateCortex5.5
Colorectaladenocarcinoma5.45
DorsalRootGanglion4.4
FetalThyroid5.25
Fetalbrain5.25
Fetalliver4.6
Fetallung4.2
GlobusPallidus4.15
Heart8.2
Hypothalamus5.7
Kidney4.3
Leukemia_chronicMyelogenousK-5624.9
Leukemia_promyelocytic-HL-604.65
Leukemialymphoblastic(MOLT-4)4.3
Liver7
Lung6
Lymphnode4.5
Lymphoma_burkitts(Daudi)6.85
Lymphoma_burkitts(Raji)7.5
MedullaOblongata4.8
OccipitalLobe4.85
OlfactoryBulb4.3
Ovary3.65
Pancreas4.4
PancreaticIslet7.75
ParietalLobe5.6
Pituitary6.3
Placenta6.05
Pons5.1
PrefrontalCortex6.7
Prostate11.85
Salivarygland4.35
SkeletalMuscle5.95
Skin4.5
SmoothMuscle6.1
Spinalcord5.7
SubthalamicNucleus5.75
SuperiorCervicalGanglion7
TemporalLobe4.9
Testis4.65
TestisGermCell4.6
TestisIntersitial5.05
TestisLeydigCell5.45
TestisSeminiferousTubule5.55
Thalamus5.45
Thymus4.65
Thyroid6.8
Tongue5.5
Tonsil5.25
Trachea4.45
TrigeminalGanglion5.4
Uterus4.5
UterusCorpus4.75
WholeBlood5.8
Wholebrain4.5
colon5.4
pineal_day8.24
pineal_night9.88
retina16.7
small_intestine5.15
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_1169_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.4 ± 0.41
Basal Forebrain2.9 ± 0.65
Basal Part of Pons2.9 ± 0.73
Cerebellar Cortex3.14 ± 0.69
Cerebellar Nuclei2.63 ± 0.5
Claustrum3.55 ± 0.84
Epithalamus3.09 ± 1.46
Frontal Lobe2.75 ± 0.68
Globus Pallidus3.02 ± 0.91
Hypothalamus2.6 ± 0.34
Insula2.95 ± 0.47
Limbic Lobe3.37 ± 0.78
Mesencephalon2.97 ± 0.63
Myelencephalon2.99 ± 0.7
Occipital Lobe3.3 ± 0.68
Parietal Lobe3.13 ± 0.86
Pontine Tegmentum2.93 ± 0.76
Striatum3.32 ± 0.65
Subthalamus2.54 ± 0.49
Temporal Lobe2.98 ± 0.75
Thalamus2.81 ± 0.7
White Matter3.36 ± 1.11
Mouse Brain ISH
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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