AutismKB 2.0

Annotation Detail for SLITRK5


View Evidences View Variants View Annotations
Basic Information Top
Gene Symbol:SLITRK5 ( FLJ58374,KIAA0918,LRRC11,bA364G4.2 )
Gene Full Name: SLIT and NTRK-like family, member 5
Band: 13q31.2
Quick LinksEntrez ID:26050; OMIM: 609680; Uniprot ID:SLIK5_HUMAN; ENSEMBL ID: ENSG00000165300; HGNC ID: 20295
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst1 / 6231916
fetus14 / 56401224
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult12 / 19391216
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor4 / 26384515
glioma0 / 1068830 
head and neck tumor1 / 1363027
kidney tumor1 / 6895914
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia1 / 9725010
normal27 / 33603078
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS2 / 12568015
prostate cancer2 / 10268019
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain19 / 110098917
cervix0 / 481710 
connective tissue0 / 1492550 
ear2 / 16212123
embryonic tissue2 / 2157229
esophagus0 / 202090 
eye3 / 21105414
heart3 / 8962633
intestine0 / 2344720 
kidney1 / 2117774
larynx1 / 2414541
liver0 / 2077430 
lung1 / 3369742
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate2 / 18934510
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach0 / 966190 
testis4 / 33044212
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 214930_at
Cell line Expression level Expression bar
721_B_lymphoblasts8.6
Adipocyte8.2
AdrenalCortex11.35
Adrenalgland7.85
Amygdala90.95
Appendix11
AtrioventricularNode11.1
BDCA4+_DentriticCells8.2
Bonemarrow9.45
BronchialEpithelialCells7.65
CD105+_Endothelial7.8
CD14+_Monocytes8.55
CD19+_BCells(neg._sel.)8.05
CD33+_Myeloid9.35
CD34+9.3
CD4+_Tcells7.7
CD56+_NKCells8.95
CD71+_EarlyErythroid8.1
CD8+_Tcells6.85
CardiacMyocytes11.55
Caudatenucleus22.05
Cerebellum9.55
CerebellumPeduncles11.4
CiliaryGanglion8.3
CingulateCortex43.8
Colorectaladenocarcinoma7.95
DorsalRootGanglion9
FetalThyroid9.45
Fetalbrain87.95
Fetalliver7.35
Fetallung6.7
GlobusPallidus21.65
Heart15.25
Hypothalamus14.7
Kidney8.05
Leukemia_chronicMyelogenousK-5627.5
Leukemia_promyelocytic-HL-607.3
Leukemialymphoblastic(MOLT-4)6.35
Liver13.65
Lung8.75
Lymphnode6.65
Lymphoma_burkitts(Daudi)11.4
Lymphoma_burkitts(Raji)12.55
MedullaOblongata18.75
OccipitalLobe64.7
OlfactoryBulb10.05
Ovary6.7
Pancreas7.3
PancreaticIslet8.95
ParietalLobe23.7
Pituitary9.75
Placenta7.95
Pons15.85
PrefrontalCortex33.75
Prostate9.75
Salivarygland7.05
SkeletalMuscle14.45
Skin8.4
SmoothMuscle8.9
Spinalcord18.35
SubthalamicNucleus15.6
SuperiorCervicalGanglion15.05
TemporalLobe16.85
Testis7.1
TestisGermCell6.5
TestisIntersitial7.3
TestisLeydigCell8.9
TestisSeminiferousTubule7.25
Thalamus12.35
Thymus6.1
Thyroid11.85
Tongue10
Tonsil8.55
Trachea8.85
TrigeminalGanglion11.1
Uterus6.35
UterusCorpus7.85
WholeBlood8.45
Wholebrain132.65
colon7.95
pineal_day9.82
pineal_night9.48
retina12.325
small_intestine7.35
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_8358_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.24 ± 0.49
Basal Forebrain4.53 ± 0.6
Basal Part of Pons4.24 ± 0.35
Cerebellar Cortex5.17 ± 0.38
Cerebellar Nuclei4.13 ± 0.48
Claustrum5.04 ± 0.73
Epithalamus4.71 ± 0.3
Frontal Lobe4.71 ± 0.59
Globus Pallidus3.44 ± 0.73
Hypothalamus4.42 ± 0.75
Insula4.73 ± 0.6
Limbic Lobe5.25 ± 0.63
Mesencephalon4.91 ± 0.65
Myelencephalon4.81 ± 0.7
Occipital Lobe5.33 ± 0.6
Parietal Lobe4.95 ± 0.72
Pontine Tegmentum4.64 ± 0.63
Striatum4.27 ± 0.53
Subthalamus3.89 ± 0.47
Temporal Lobe4.93 ± 0.55
Thalamus4.23 ± 0.68
White Matter4.2 ± 0.25
Mouse Brain ISH
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


Copyright © 2017, Center for Bioinformatics , Peking University | All Rights Reserved