Annotation Detail for RAB11FIP5
Basic Information Top
| Gene Symbol: | RAB11FIP5 ( DKFZp434H018,GAF1,KIAA0857,RIP11,pp75 ) |
|---|---|
| Gene Full Name: | RAB11 family interacting protein 5 (class I) |
| Band: | 2p13.2 |
| Quick Links | Entrez ID:26056; OMIM: 605536; Uniprot ID:RFIP5_HUMAN; ENSEMBL ID: ENSG00000135631; HGNC ID: 24845 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.24557
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 1 / 62319 | 16 | |
| fetus | 9 / 564012 | 15 | |
| neonate | 0 / 31097 | 0 | |
| infant | 4 / 23620 | 169 |  |
| juvenile | 0 / 55556 | 0 | |
| adult | 107 / 1939121 | 55 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 6 / 94178 | 63 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 8 / 82823 | 96 | |
| colorectal tumor | 6 / 114246 | 52 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 5 / 119369 | 41 | |
| germ cell tumor | 16 / 263845 | 60 | |
| glioma | 11 / 106883 | 102 | |
| head and neck tumor | 12 / 136302 | 88 | |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 8 / 96359 | 83 | |
| lung tumor | 6 / 103127 | 58 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 1 / 97250 | 10 |  |
| normal | 158 / 3360307 | 47 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 4 / 104616 | 38 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 9 / 102680 | 87 | |
| retinoblastoma | 4 / 46356 | 86 | |
| skin tumor | 7 / 124949 | 56 | |
| soft tissue/muscle tissue tumor | 8 / 125191 | 63 | |
| uterine tumor | 4 / 90257 | 44 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 3 / 40015 | 74 | |
| bladder | 0 / 29757 | 0 | |
| blood | 1 / 123478 | 8 | |
| bone | 8 / 71655 | 111 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 60 / 1100989 | 54 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 10 / 149255 | 66 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 2 / 215722 | 9 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 14 / 211054 | 66 | |
| heart | 2 / 89626 | 22 | |
| intestine | 9 / 234472 | 38 | |
| kidney | 27 / 211777 | 127 | |
| larynx | 1 / 24145 | 41 | |
| liver | 11 / 207743 | 52 | |
| lung | 13 / 336974 | 38 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 8 / 153271 | 52 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 5 / 107715 | 46 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 3 / 102051 | 29 | |
| pancreas | 6 / 214812 | 27 | |
| parathyroid | 3 / 20539 | 146 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 17 / 280825 | 60 | |
| prostate | 18 / 189345 | 95 | |
| salivary gland | 11 / 20155 | 545 |  |
| skin | 10 / 210574 | 47 | |
| spleen | 9 / 53952 | 166 | |
| stomach | 2 / 96619 | 20 | |
| testis | 37 / 330442 | 111 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 16 / 232878 | 68 | |
| vascular | 4 / 51780 | 77 | |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 210879_s_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 48.8 | |
| Adipocyte | 60.8 | |
| AdrenalCortex | 54.45 | |
| Adrenalgland | 53 | |
| Amygdala | 74.5 | |
| Appendix | 71.35 | |
| AtrioventricularNode | 45.85 | |
| BDCA4+_DentriticCells | 42.85 | |
| Bonemarrow | 47.75 | |
| BronchialEpithelialCells | 61.1 | |
| CD105+_Endothelial | 47.85 | |
| CD14+_Monocytes | 42.5 | |
| CD19+_BCells(neg._sel.) | 44.8 | |
| CD33+_Myeloid | 51.2 | |
| CD34+ | 51.95 | |
| CD4+_Tcells | 42.5 | |
| CD56+_NKCells | 52.35 | |
| CD71+_EarlyErythroid | 43.15 | |
| CD8+_Tcells | 41.15 | |
| CardiacMyocytes | 79.1 | |
| Caudatenucleus | 76.35 | |
| Cerebellum | 86.8 | |
| CerebellumPeduncles | 82.35 | |
| CiliaryGanglion | 49.95 | |
| CingulateCortex | 123.7 | |
| Colorectaladenocarcinoma | 50.55 | |
| DorsalRootGanglion | 110.95 | |
| FetalThyroid | 59.85 | |
| Fetalbrain | 61.75 | |
| Fetalliver | 42.4 | |
| Fetallung | 38.15 | |
| GlobusPallidus | 52.75 | |
| Heart | 117.05 | |
| Hypothalamus | 100 | |
| Kidney | 112.45 | |
| Leukemia_chronicMyelogenousK-562 | 45.3 | |
| Leukemia_promyelocytic-HL-60 | 35.25 | |
| Leukemialymphoblastic(MOLT-4) | 39.9 | |
| Liver | 53.65 | |
| Lung | 59.45 | |
| Lymphnode | 45 | |
| Lymphoma_burkitts(Daudi) | 65.15 | |
| Lymphoma_burkitts(Raji) | 62.1 | |
| MedullaOblongata | 123.55 | |
| OccipitalLobe | 113.55 | |
| OlfactoryBulb | 38.8 | |
| Ovary | 36.6 | |
| Pancreas | 40.5 | |
| PancreaticIslet | 66.1 | |
| ParietalLobe | 76.75 | |
| Pituitary | 65.3 | |
| Placenta | 234.95 | |
| Pons | 76.85 | |
| PrefrontalCortex | 130.2 | |
| Prostate | 68.8 | |
| Salivarygland | 49 | |
| SkeletalMuscle | 59.25 | |
| Skin | 45.6 | |
| SmoothMuscle | 81.3 | |
| Spinalcord | 70.1 | |
| SubthalamicNucleus | 137.15 | |
| SuperiorCervicalGanglion | 92.65 | |
| TemporalLobe | 134 | |
| Testis | 874.25 | |
| TestisGermCell | 571.55 | |
| TestisIntersitial | 809.2 | |
| TestisLeydigCell | 332.7 | |
| TestisSeminiferousTubule | 369.6 | |
| Thalamus | 175.5 | |
| Thymus | 30.6 | |
| Thyroid | 78.2 | |
| Tongue | 49.45 | |
| Tonsil | 59.85 | |
| Trachea | 61 | |
| TrigeminalGanglion | 99.45 | |
| Uterus | 51 | |
| UterusCorpus | 54.3 | |
| WholeBlood | 51.95 | |
| Wholebrain | 53.25 | |
| colon | 45.7 | |
| pineal_day | 94.52 | |
| pineal_night | 116.2 | |
| retina | 69.125 | |
| small_intestine | 50.65 | |
- Probe name: CUST_6284_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 3.73 ± 0.54 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 3.07 ± 0.48 | |
| Basal Part of Pons | 4.12 ± 0.29 | |
| Cerebellar Cortex | 3.58 ± 0.51 | |
| Cerebellar Nuclei | 3.6 ± 0.57 | |
| Claustrum | 3.78 ± 0.65 | |
| Epithalamus | 2.93 ± 0.54 | |
| Frontal Lobe | 3.6 ± 0.59 | |
| Globus Pallidus | 3.86 ± 0.59 | |
| Hypothalamus | 3.36 ± 0.54 | |
| Insula | 3.35 ± 0.54 | |
| Limbic Lobe | 3.73 ± 0.53 | |
| Mesencephalon | 3.59 ± 0.52 | |
| Myelencephalon | 3.53 ± 0.6 | |
| Occipital Lobe | 3.89 ± 0.59 | |
| Parietal Lobe | 3.69 ± 0.6 | |
| Pontine Tegmentum | 3.53 ± 0.61 | |
| Striatum | 3.39 ± 0.73 | |
| Subthalamus | 3.68 ± 0.21 | |
| Temporal Lobe | 3.51 ± 0.57 | |
| Thalamus | 3.7 ± 0.58 | |
| White Matter | 2.42 ± 0.57 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Rab11fip5 | CB | Cerebellum | 23.49 | |
| 35.43 | | |||
| Rab11fip5 | CTX | Cerebral cortex | 23.47 | |
| 19.6 | | |||
| Rab11fip5 | HIP | Hippocampal region | 19.02 | |
| 21.14 | | |||
| Rab11fip5 | HPF | Hippocampal formation | 17.27 | |
| 17.16 | | |||
| Rab11fip5 | HY | Hypothalamus | 3.83 | |
| 3.1 | | |||
| Rab11fip5 | LSX | Lateral septal complex | 3.89 | |
| 2.99 | | |||
| Rab11fip5 | MB | Midbrain | 9.39 | |
| 9.62 | | |||
| Rab11fip5 | MY | Medulla | 21.93 | |
| 27.92 | | |||
| Rab11fip5 | OLF | Olfactory bulb | 16.02 | |
| 13.17 | | |||
| Rab11fip5 | P | Pons | 15.68 | |
| 18.22 | | |||
| Rab11fip5 | PAL | Pallidum | 9.13 | |
| 9.48 | | |||
| Rab11fip5 | RHP | Retrohippocampal region | 14.59 | |
| 12.04 | | |||
| Rab11fip5 | sAMY | Striatum-like amygdalar nuclei | 8.16 | |
| 6.29 | | |||
| Rab11fip5 | STR | Striatum | 3.89 | |
| 3.2 | | |||
| Rab11fip5 | STRd | Striatum dorsal region | 3.38 | |
| 2.92 | | |||
| Rab11fip5 | STRv | Striatum ventral region | 3.15 | |
| 2.5 | | |||
| Rab11fip5 | TH | Thalamus | 24.41 | |
| 22.23 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp01123758 | 12 | 585 | 596 | LKDSAVLDQSAK | Peptide Atlas |