Annotation Detail for GPSM1
Basic Information Top
| Gene Symbol: | GPSM1 ( AGS3,DKFZp727I051 ) |
|---|---|
| Gene Full Name: | G-protein signaling modulator 1 |
| Band: | 9q34.3 |
| Quick Links | Entrez ID:26086; OMIM: 609491; Uniprot ID:GPSM1_HUMAN; ENSEMBL ID: ENSG00000160360; HGNC ID: 17858 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.239370
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 4 / 70761 | 56 |  |
| blastocyst | 1 / 62319 | 16 |  |
| fetus | 14 / 564012 | 24 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 48 / 1939121 | 24 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 1 / 94178 | 10 |  |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 5 / 82823 | 60 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 1 / 119369 | 8 | |
| germ cell tumor | 10 / 263845 | 37 | |
| glioma | 18 / 106883 | 168 | |
| head and neck tumor | 3 / 136302 | 22 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 2 / 96359 | 20 | |
| lung tumor | 7 / 103127 | 67 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 80 / 3360307 | 23 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 10 / 125680 | 79 | |
| prostate cancer | 1 / 102680 | 9 | |
| retinoblastoma | 6 / 46356 | 129 | |
| skin tumor | 3 / 124949 | 24 | |
| soft tissue/muscle tissue tumor | 14 / 125191 | 111 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 5 / 71655 | 69 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 38 / 1100989 | 34 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 1 / 149255 | 6 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 8 / 215722 | 37 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 16 / 211054 | 75 | |
| heart | 1 / 89626 | 11 | |
| intestine | 0 / 234472 | 0 | |
| kidney | 1 / 211777 | 4 | |
| larynx | 1 / 24145 | 41 | |
| liver | 2 / 207743 | 9 | |
| lung | 15 / 336974 | 44 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 5 / 153271 | 32 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 6 / 107715 | 55 | |
| nerve | 2 / 15768 | 126 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 5 / 214812 | 23 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 2 / 41328 | 48 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 12 / 280825 | 42 | |
| prostate | 2 / 189345 | 10 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 5 / 210574 | 23 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 0 / 96619 | 0 | |
| testis | 3 / 330442 | 9 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 8 / 232878 | 34 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: A_23_P340296
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.69 ± 0.93 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.2 ± 0.73 | |
| Basal Part of Pons | 3.96 ± 0.58 | |
| Cerebellar Cortex | 4.34 ± 0.48 | |
| Cerebellar Nuclei | 3.97 ± 0.44 | |
| Claustrum | 4.4 ± 0.88 | |
| Epithalamus | 3.71 ± 0.55 | |
| Frontal Lobe | 3.75 ± 0.72 | |
| Globus Pallidus | 4.43 ± 0.42 | |
| Hypothalamus | 3.61 ± 0.44 | |
| Insula | 3.94 ± 0.52 | |
| Limbic Lobe | 3.89 ± 0.7 | |
| Mesencephalon | 4.02 ± 0.71 | |
| Myelencephalon | 3.93 ± 0.71 | |
| Occipital Lobe | 4.03 ± 0.71 | |
| Parietal Lobe | 3.92 ± 0.71 | |
| Pontine Tegmentum | 3.91 ± 0.73 | |
| Striatum | 3.55 ± 0.78 | |
| Subthalamus | 3.53 ± 0.44 | |
| Temporal Lobe | 3.92 ± 0.64 | |
| Thalamus | 3.92 ± 0.68 | |
| White Matter | 4.97 ± 0.33 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Gpsm1 | CB | Cerebellum | 32.32 | |
| 36.87 | | |||
| Gpsm1 | CTX | Cerebral cortex | 20.25 | |
| 13.77 | | |||
| Gpsm1 | HIP | Hippocampal region | 10.07 | |
| 9.29 | | |||
| Gpsm1 | HPF | Hippocampal formation | 11.07 | |
| 9.07 | | |||
| Gpsm1 | HY | Hypothalamus | 11.51 | |
| 8.45 | | |||
| Gpsm1 | LSX | Lateral septal complex | 16.48 | |
| 11.03 | | |||
| Gpsm1 | MB | Midbrain | 25.1 | |
| 20.63 | | |||
| Gpsm1 | MY | Medulla | 28.37 | |
| 27.77 | | |||
| Gpsm1 | OLF | Olfactory bulb | 54.52 | |
| 69.11 | | |||
| Gpsm1 | P | Pons | 20.66 | |
| 19.49 | | |||
| Gpsm1 | PAL | Pallidum | 9.35 | |
| 7.54 | | |||
| Gpsm1 | RHP | Retrohippocampal region | 12.8 | |
| 8.81 | | |||
| Gpsm1 | sAMY | Striatum-like amygdalar nuclei | 6.38 | |
| 4.88 | | |||
| Gpsm1 | STR | Striatum | 17.69 | |
| 12.26 | | |||
| Gpsm1 | STRd | Striatum dorsal region | 16.71 | |
| 11.7 | | |||
| Gpsm1 | STRv | Striatum ventral region | 29.54 | |
| 19.33 | | |||
| Gpsm1 | TH | Thalamus | 10.04 | |
| 7.74 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00039498 | 15 | 467 | 481 | APSSDEECFFDLLTK | Peptide Atlas |