Annotation Detail for GGA1
Basic Information Top
| Gene Symbol: | GGA1 ( - ) |
|---|---|
| Gene Full Name: | golgi-associated, gamma adaptin ear containing, ARF binding protein 1 |
| Band: | 22q13.1 |
| Quick Links | Entrez ID:26088; OMIM: 606004; Uniprot ID:GGA1_HUMAN; ENSEMBL ID: ENSG00000100083; HGNC ID: 17842 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.499158
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 7 / 70761 | 98 |  |
| blastocyst | 12 / 62319 | 192 | |
| fetus | 40 / 564012 | 70 | |
| neonate | 3 / 31097 | 96 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 14 / 55556 | 251 |  |
| adult | 133 / 1939121 | 68 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 2 / 17475 | 114 | |
| breast (mammary gland) tumor | 12 / 94178 | 127 | |
| cervical tumor | 1 / 34366 | 29 |  |
| chondrosarcoma | 4 / 82823 | 48 | |
| colorectal tumor | 7 / 114246 | 61 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 46 / 119369 | 385 | |
| germ cell tumor | 28 / 263845 | 106 | |
| glioma | 14 / 106883 | 130 | |
| head and neck tumor | 10 / 136302 | 73 | |
| kidney tumor | 7 / 68959 | 101 | |
| leukemia | 11 / 95842 | 114 | |
| liver tumor | 4 / 96359 | 41 | |
| lung tumor | 7 / 103127 | 67 | |
| lymphoma | 21 / 71755 | 292 | |
| non-neoplasia | 7 / 97250 | 71 | |
| normal | 305 / 3360307 | 90 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 4 / 104616 | 38 | |
| primitive neuroectodermal tumor of the CNS | 36 / 125680 | 286 | |
| prostate cancer | 2 / 102680 | 19 | |
| retinoblastoma | 3 / 46356 | 64 | |
| skin tumor | 14 / 124949 | 112 | |
| soft tissue/muscle tissue tumor | 6 / 125191 | 47 | |
| uterine tumor | 4 / 90257 | 44 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 4 / 33197 | 120 | |
| ascites | 43 / 40015 | 1074 |  |
| bladder | 0 / 29757 | 0 | |
| blood | 11 / 123478 | 89 | |
| bone | 3 / 71655 | 41 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 115 / 1100989 | 104 | |
| cervix | 3 / 48171 | 62 | |
| connective tissue | 6 / 149255 | 40 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 27 / 215722 | 125 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 17 / 211054 | 80 | |
| heart | 3 / 89626 | 33 | |
| intestine | 20 / 234472 | 85 | |
| kidney | 16 / 211777 | 75 | |
| larynx | 1 / 24145 | 41 | |
| liver | 7 / 207743 | 33 | |
| lung | 17 / 336974 | 50 | |
| lymph | 5 / 44270 | 112 | |
| lymph node | 4 / 91610 | 43 | |
| mammary gland | 21 / 153271 | 137 | |
| mouth | 8 / 67052 | 119 | |
| muscle | 3 / 107715 | 27 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 1 / 102051 | 9 |  |
| pancreas | 12 / 214812 | 55 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 19 / 280825 | 67 | |
| prostate | 8 / 189345 | 42 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 16 / 210574 | 75 | |
| spleen | 12 / 53952 | 222 | |
| stomach | 3 / 96619 | 31 | |
| testis | 109 / 330442 | 329 | |
| thymus | 11 / 81131 | 135 | |
| thyroid | 6 / 47473 | 126 | |
| tonsil | 3 / 16999 | 176 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 13 / 232878 | 55 | |
| vascular | 1 / 51780 | 19 | |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 218114_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 79.75 | |
| Adipocyte | 51.1 | |
| AdrenalCortex | 68.85 | |
| Adrenalgland | 59.2 | |
| Amygdala | 50.9 | |
| Appendix | 52.1 | |
| AtrioventricularNode | 39.75 | |
| BDCA4+_DentriticCells | 59.3 | |
| Bonemarrow | 45.75 | |
| BronchialEpithelialCells | 40.15 | |
| CD105+_Endothelial | 58.15 | |
| CD14+_Monocytes | 56.6 | |
| CD19+_BCells(neg._sel.) | 145.65 | |
| CD33+_Myeloid | 108.45 | |
| CD34+ | 66.6 | |
| CD4+_Tcells | 67.95 | |
| CD56+_NKCells | 117.85 | |
| CD71+_EarlyErythroid | 47.5 | |
| CD8+_Tcells | 51.75 | |
| CardiacMyocytes | 62.5 | |
| Caudatenucleus | 45.35 | |
| Cerebellum | 54.2 | |
| CerebellumPeduncles | 112.45 | |
| CiliaryGanglion | 36.3 | |
| CingulateCortex | 52.6 | |
| Colorectaladenocarcinoma | 80.85 | |
| DorsalRootGanglion | 46.5 | |
| FetalThyroid | 52.2 | |
| Fetalbrain | 56.8 | |
| Fetalliver | 40.4 | |
| Fetallung | 47.1 | |
| GlobusPallidus | 36.9 | |
| Heart | 86.95 | |
| Hypothalamus | 57 | |
| Kidney | 41.35 | |
| Leukemia_chronicMyelogenousK-562 | 79.05 | |
| Leukemia_promyelocytic-HL-60 | 64.4 | |
| Leukemialymphoblastic(MOLT-4) | 53.25 | |
| Liver | 59.8 | |
| Lung | 81.95 | |
| Lymphnode | 55.25 | |
| Lymphoma_burkitts(Daudi) | 94.9 | |
| Lymphoma_burkitts(Raji) | 265.45 | |
| MedullaOblongata | 54.65 | |
| OccipitalLobe | 46.4 | |
| OlfactoryBulb | 49.3 | |
| Ovary | 32.75 | |
| Pancreas | 39.65 | |
| PancreaticIslet | 55.6 | |
| ParietalLobe | 54.3 | |
| Pituitary | 77.15 | |
| Placenta | 58.35 | |
| Pons | 52.95 | |
| PrefrontalCortex | 64.5 | |
| Prostate | 84.6 | |
| Salivarygland | 41.2 | |
| SkeletalMuscle | 59.75 | |
| Skin | 39.3 | |
| SmoothMuscle | 42.35 | |
| Spinalcord | 76.45 | |
| SubthalamicNucleus | 45.7 | |
| SuperiorCervicalGanglion | 58.25 | |
| TemporalLobe | 45.5 | |
| Testis | 1031 | |
| TestisGermCell | 672.2 | |
| TestisIntersitial | 502.7 | |
| TestisLeydigCell | 276.45 | |
| TestisSeminiferousTubule | 456.5 | |
| Thalamus | 60.1 | |
| Thymus | 39 | |
| Thyroid | 179.9 | |
| Tongue | 50.3 | |
| Tonsil | 62.1 | |
| Trachea | 36.65 | |
| TrigeminalGanglion | 58.45 | |
| Uterus | 65.1 | |
| UterusCorpus | 44.25 | |
| WholeBlood | 71.55 | |
| Wholebrain | 44.3 | |
| colon | 32.2 | |
| pineal_day | 70.24 | |
| pineal_night | 63.02 | |
| retina | 65.775 | |
| small_intestine | 26.8 | |
- Probe name: CUST_1569_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 3.81 ± 0.88 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 3.82 ± 0.35 | |
| Basal Part of Pons | 3.61 ± 0.66 | |
| Cerebellar Cortex | 4.1 ± 0.3 | |
| Cerebellar Nuclei | 3.7 ± 0.6 | |
| Claustrum | 3.95 ± 0.89 | |
| Epithalamus | 3.27 ± 0.63 | |
| Frontal Lobe | 3.63 ± 0.66 | |
| Globus Pallidus | 3.54 ± 0.75 | |
| Hypothalamus | 3.36 ± 0.41 | |
| Insula | 3.22 ± 0.72 | |
| Limbic Lobe | 3.77 ± 0.59 | |
| Mesencephalon | 3.65 ± 0.55 | |
| Myelencephalon | 3.68 ± 0.61 | |
| Occipital Lobe | 3.8 ± 0.47 | |
| Parietal Lobe | 3.63 ± 0.69 | |
| Pontine Tegmentum | 3.87 ± 0.74 | |
| Striatum | 3.56 ± 0.64 | |
| Subthalamus | 3.42 ± 0.26 | |
| Temporal Lobe | 3.7 ± 0.58 | |
| Thalamus | 3.79 ± 0.6 | |
| White Matter | 4.27 ± 0.35 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Gga1 | CB | Cerebellum | 100 | |
| 100 | | |||
| Gga1 | CTX | Cerebral cortex | 100 | |
| 100 | | |||
| Gga1 | HIP | Hippocampal region | 100 | |
| 100 | | |||
| Gga1 | HPF | Hippocampal formation | 100 | |
| 100 | | |||
| Gga1 | HY | Hypothalamus | 100 | |
| 100 | | |||
| Gga1 | LSX | Lateral septal complex | 100 | |
| 100 | | |||
| Gga1 | MB | Midbrain | 100 | |
| 100 | | |||
| Gga1 | MY | Medulla | 62.41 | |
| 100 | | |||
| Gga1 | OLF | Olfactory bulb | 100 | |
| 100 | | |||
| Gga1 | P | Pons | 70.97 | |
| 100 | | |||
| Gga1 | PAL | Pallidum | 100 | |
| 100 | | |||
| Gga1 | RHP | Retrohippocampal region | 100 | |
| 100 | | |||
| Gga1 | sAMY | Striatum-like amygdalar nuclei | 100 | |
| 100 | | |||
| Gga1 | STR | Striatum | 100 | |
| 100 | | |||
| Gga1 | STRd | Striatum dorsal region | 100 | |
| 100 | | |||
| Gga1 | STRv | Striatum ventral region | 100 | |
| 100 | | |||
| Gga1 | TH | Thalamus | 100 | |
| 100 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| GGA1_HUMAN_1 | 13 | 1 | 13 | MEPAMEPETLEAR | PRIDE |
| PAp00355564 | 30 | 266 | 295 | LASDTEDNDEALAEILQANDNLTQVINLYK | Peptide Atlas |