Annotation Detail for GGA1


Gene Symbol: | GGA1 ( - ) |
---|---|
Gene Full Name: | golgi-associated, gamma adaptin ear containing, ARF binding protein 1 |
Band: | 22q13.1 |
Quick Links | Entrez ID:26088; OMIM: 606004; Uniprot ID:GGA1_HUMAN; ENSEMBL ID: ENSG00000100083; HGNC ID: 17842 |
Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.499158
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
![]() | |||
embryoid body | 7 / 70761 | 98 | ![]() |
blastocyst | 12 / 62319 | 192 | ![]() |
fetus | 40 / 564012 | 70 | ![]() |
neonate | 3 / 31097 | 96 | ![]() |
infant | 0 / 23620 | 0 | |
juvenile | 14 / 55556 | 251 | ![]() |
adult | 133 / 1939121 | 68 | ![]() |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
![]() | |||
adrenal tumor | 0 / 12794 | 0 | |
bladder carcinoma | 2 / 17475 | 114 | ![]() |
breast (mammary gland) tumor | 12 / 94178 | 127 | ![]() |
cervical tumor | 1 / 34366 | 29 | ![]() |
chondrosarcoma | 4 / 82823 | 48 | ![]() |
colorectal tumor | 7 / 114246 | 61 | ![]() |
esophageal tumor | 0 / 17290 | 0 | |
gastrointestinal tumor | 46 / 119369 | 385 | ![]() |
germ cell tumor | 28 / 263845 | 106 | ![]() |
glioma | 14 / 106883 | 130 | ![]() |
head and neck tumor | 10 / 136302 | 73 | ![]() |
kidney tumor | 7 / 68959 | 101 | ![]() |
leukemia | 11 / 95842 | 114 | ![]() |
liver tumor | 4 / 96359 | 41 | ![]() |
lung tumor | 7 / 103127 | 67 | ![]() |
lymphoma | 21 / 71755 | 292 | ![]() |
non-neoplasia | 7 / 97250 | 71 | ![]() |
normal | 305 / 3360307 | 90 | ![]() |
ovarian tumor | 0 / 76682 | 0 | |
pancreatic tumor | 4 / 104616 | 38 | ![]() |
primitive neuroectodermal tumor of the CNS | 36 / 125680 | 286 | ![]() |
prostate cancer | 2 / 102680 | 19 | ![]() |
retinoblastoma | 3 / 46356 | 64 | ![]() |
skin tumor | 14 / 124949 | 112 | ![]() |
soft tissue/muscle tissue tumor | 6 / 125191 | 47 | ![]() |
uterine tumor | 4 / 90257 | 44 | ![]() |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
![]() | |||
adipose tissue | 0 / 13106 | 0 | |
adrenal gland | 4 / 33197 | 120 | ![]() |
ascites | 43 / 40015 | 1074 | ![]() |
bladder | 0 / 29757 | 0 | |
blood | 11 / 123478 | 89 | ![]() |
bone | 3 / 71655 | 41 | ![]() |
bone marrow | 1 / 48801 | 20 | ![]() |
brain | 115 / 1100989 | 104 | ![]() |
cervix | 3 / 48171 | 62 | ![]() |
connective tissue | 6 / 149255 | 40 | ![]() |
ear | 0 / 16212 | 0 | |
embryonic tissue | 27 / 215722 | 125 | ![]() |
esophagus | 1 / 20209 | 49 | ![]() |
eye | 17 / 211054 | 80 | ![]() |
heart | 3 / 89626 | 33 | ![]() |
intestine | 20 / 234472 | 85 | ![]() |
kidney | 16 / 211777 | 75 | ![]() |
larynx | 1 / 24145 | 41 | ![]() |
liver | 7 / 207743 | 33 | ![]() |
lung | 17 / 336974 | 50 | ![]() |
lymph | 5 / 44270 | 112 | ![]() |
lymph node | 4 / 91610 | 43 | ![]() |
mammary gland | 21 / 153271 | 137 | ![]() |
mouth | 8 / 67052 | 119 | ![]() |
muscle | 3 / 107715 | 27 | ![]() |
nerve | 1 / 15768 | 63 | ![]() |
ovary | 1 / 102051 | 9 | ![]() |
pancreas | 12 / 214812 | 55 | ![]() |
parathyroid | 0 / 20539 | 0 | |
pharynx | 1 / 41328 | 24 | ![]() |
pituitary gland | 1 / 16585 | 60 | ![]() |
placenta | 19 / 280825 | 67 | ![]() |
prostate | 8 / 189345 | 42 | ![]() |
salivary gland | 1 / 20155 | 49 | ![]() |
skin | 16 / 210574 | 75 | ![]() |
spleen | 12 / 53952 | 222 | ![]() |
stomach | 3 / 96619 | 31 | ![]() |
testis | 109 / 330442 | 329 | ![]() |
thymus | 11 / 81131 | 135 | ![]() |
thyroid | 6 / 47473 | 126 | ![]() |
tonsil | 3 / 16999 | 176 | ![]() |
trachea | 1 / 52413 | 19 | ![]() |
umbilical cord | 0 / 13680 | 0 | |
uterus | 13 / 232878 | 55 | ![]() |
vascular | 1 / 51780 | 19 | ![]() |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 218114_at
Cell line | Expression level | Expression bar |
---|---|---|
![]() | ||
721_B_lymphoblasts | 79.75 | ![]() |
Adipocyte | 51.1 | ![]() |
AdrenalCortex | 68.85 | ![]() |
Adrenalgland | 59.2 | ![]() |
Amygdala | 50.9 | ![]() |
Appendix | 52.1 | ![]() |
AtrioventricularNode | 39.75 | ![]() |
BDCA4+_DentriticCells | 59.3 | ![]() |
Bonemarrow | 45.75 | ![]() |
BronchialEpithelialCells | 40.15 | ![]() |
CD105+_Endothelial | 58.15 | ![]() |
CD14+_Monocytes | 56.6 | ![]() |
CD19+_BCells(neg._sel.) | 145.65 | ![]() |
CD33+_Myeloid | 108.45 | ![]() |
CD34+ | 66.6 | ![]() |
CD4+_Tcells | 67.95 | ![]() |
CD56+_NKCells | 117.85 | ![]() |
CD71+_EarlyErythroid | 47.5 | ![]() |
CD8+_Tcells | 51.75 | ![]() |
CardiacMyocytes | 62.5 | ![]() |
Caudatenucleus | 45.35 | ![]() |
Cerebellum | 54.2 | ![]() |
CerebellumPeduncles | 112.45 | ![]() |
CiliaryGanglion | 36.3 | ![]() |
CingulateCortex | 52.6 | ![]() |
Colorectaladenocarcinoma | 80.85 | ![]() |
DorsalRootGanglion | 46.5 | ![]() |
FetalThyroid | 52.2 | ![]() |
Fetalbrain | 56.8 | ![]() |
Fetalliver | 40.4 | ![]() |
Fetallung | 47.1 | ![]() |
GlobusPallidus | 36.9 | ![]() |
Heart | 86.95 | ![]() |
Hypothalamus | 57 | ![]() |
Kidney | 41.35 | ![]() |
Leukemia_chronicMyelogenousK-562 | 79.05 | ![]() |
Leukemia_promyelocytic-HL-60 | 64.4 | ![]() |
Leukemialymphoblastic(MOLT-4) | 53.25 | ![]() |
Liver | 59.8 | ![]() |
Lung | 81.95 | ![]() |
Lymphnode | 55.25 | ![]() |
Lymphoma_burkitts(Daudi) | 94.9 | ![]() |
Lymphoma_burkitts(Raji) | 265.45 | ![]() |
MedullaOblongata | 54.65 | ![]() |
OccipitalLobe | 46.4 | ![]() |
OlfactoryBulb | 49.3 | ![]() |
Ovary | 32.75 | ![]() |
Pancreas | 39.65 | ![]() |
PancreaticIslet | 55.6 | ![]() |
ParietalLobe | 54.3 | ![]() |
Pituitary | 77.15 | ![]() |
Placenta | 58.35 | ![]() |
Pons | 52.95 | ![]() |
PrefrontalCortex | 64.5 | ![]() |
Prostate | 84.6 | ![]() |
Salivarygland | 41.2 | ![]() |
SkeletalMuscle | 59.75 | ![]() |
Skin | 39.3 | ![]() |
SmoothMuscle | 42.35 | ![]() |
Spinalcord | 76.45 | ![]() |
SubthalamicNucleus | 45.7 | ![]() |
SuperiorCervicalGanglion | 58.25 | ![]() |
TemporalLobe | 45.5 | ![]() |
Testis | 1031 | ![]() |
TestisGermCell | 672.2 | ![]() |
TestisIntersitial | 502.7 | ![]() |
TestisLeydigCell | 276.45 | ![]() |
TestisSeminiferousTubule | 456.5 | ![]() |
Thalamus | 60.1 | ![]() |
Thymus | 39 | ![]() |
Thyroid | 179.9 | ![]() |
Tongue | 50.3 | ![]() |
Tonsil | 62.1 | ![]() |
Trachea | 36.65 | ![]() |
TrigeminalGanglion | 58.45 | ![]() |
Uterus | 65.1 | ![]() |
UterusCorpus | 44.25 | ![]() |
WholeBlood | 71.55 | ![]() |
Wholebrain | 44.3 | ![]() |
colon | 32.2 | ![]() |
pineal_day | 70.24 | ![]() |
pineal_night | 63.02 | ![]() |
retina | 65.775 | ![]() |
small_intestine | 26.8 | ![]() |
- Probe name: CUST_1569_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue | Expression(mean ± stddev) | Expression Bar |
---|---|---|
Amygdala | 3.81 ± 0.88 | ![]() ![]() ![]() |
Basal Forebrain | 3.82 ± 0.35 | ![]() ![]() ![]() |
Basal Part of Pons | 3.61 ± 0.66 | ![]() ![]() ![]() |
Cerebellar Cortex | 4.1 ± 0.3 | ![]() ![]() ![]() |
Cerebellar Nuclei | 3.7 ± 0.6 | ![]() ![]() ![]() |
Claustrum | 3.95 ± 0.89 | ![]() ![]() ![]() |
Epithalamus | 3.27 ± 0.63 | ![]() ![]() ![]() |
Frontal Lobe | 3.63 ± 0.66 | ![]() ![]() ![]() |
Globus Pallidus | 3.54 ± 0.75 | ![]() ![]() ![]() |
Hypothalamus | 3.36 ± 0.41 | ![]() ![]() ![]() |
Insula | 3.22 ± 0.72 | ![]() ![]() ![]() |
Limbic Lobe | 3.77 ± 0.59 | ![]() ![]() ![]() |
Mesencephalon | 3.65 ± 0.55 | ![]() ![]() ![]() |
Myelencephalon | 3.68 ± 0.61 | ![]() ![]() ![]() |
Occipital Lobe | 3.8 ± 0.47 | ![]() ![]() ![]() |
Parietal Lobe | 3.63 ± 0.69 | ![]() ![]() ![]() |
Pontine Tegmentum | 3.87 ± 0.74 | ![]() ![]() ![]() |
Striatum | 3.56 ± 0.64 | ![]() ![]() ![]() |
Subthalamus | 3.42 ± 0.26 | ![]() ![]() ![]() |
Temporal Lobe | 3.7 ± 0.58 | ![]() ![]() ![]() |
Thalamus | 3.79 ± 0.6 | ![]() ![]() ![]() |
White Matter | 4.27 ± 0.35 | ![]() ![]() ![]() |
Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
---|---|---|---|---|
Gga1 | CB | Cerebellum | 100 | ![]() |
100 | ![]() | |||
Gga1 | CTX | Cerebral cortex | 100 | ![]() |
100 | ![]() | |||
Gga1 | HIP | Hippocampal region | 100 | ![]() |
100 | ![]() | |||
Gga1 | HPF | Hippocampal formation | 100 | ![]() |
100 | ![]() | |||
Gga1 | HY | Hypothalamus | 100 | ![]() |
100 | ![]() | |||
Gga1 | LSX | Lateral septal complex | 100 | ![]() |
100 | ![]() | |||
Gga1 | MB | Midbrain | 100 | ![]() |
100 | ![]() | |||
Gga1 | MY | Medulla | 62.41 | ![]() |
100 | ![]() | |||
Gga1 | OLF | Olfactory bulb | 100 | ![]() |
100 | ![]() | |||
Gga1 | P | Pons | 70.97 | ![]() |
100 | ![]() | |||
Gga1 | PAL | Pallidum | 100 | ![]() |
100 | ![]() | |||
Gga1 | RHP | Retrohippocampal region | 100 | ![]() |
100 | ![]() | |||
Gga1 | sAMY | Striatum-like amygdalar nuclei | 100 | ![]() |
100 | ![]() | |||
Gga1 | STR | Striatum | 100 | ![]() |
100 | ![]() | |||
Gga1 | STRd | Striatum dorsal region | 100 | ![]() |
100 | ![]() | |||
Gga1 | STRv | Striatum ventral region | 100 | ![]() |
100 | ![]() | |||
Gga1 | TH | Thalamus | 100 | ![]() |
100 | ![]() |
Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
---|---|---|---|---|---|
GGA1_HUMAN_1 | 13 | 1 | 13 | MEPAMEPETLEAR | PRIDE |
PAp00355564 | 30 | 266 | 295 | LASDTEDNDEALAEILQANDNLTQVINLYK | Peptide Atlas |