AutismKB 2.0

Annotation Detail for CCDC69


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Basic Information Top
Gene Symbol:CCDC69 ( DKFZp434C171,FLJ13705 )
Gene Full Name: coiled-coil domain containing 69
Band: 5q33.1
Quick LinksEntrez ID:26112; OMIM: NA; Uniprot ID:CCD69_HUMAN; ENSEMBL ID: ENSG00000198624; HGNC ID: 24487
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst0 / 623190 
fetus10 / 56401217
neonate1 / 3109732
infant1 / 2362042
juvenile0 / 555560 
adult54 / 193912127
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma1 / 1747557
breast (mammary gland) tumor1 / 9417810
cervical tumor1 / 3436629
chondrosarcoma0 / 828230 
colorectal tumor1 / 1142468
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor8 / 26384530
glioma1 / 1068839
head and neck tumor4 / 13630229
kidney tumor0 / 689590 
leukemia9 / 9584293
liver tumor0 / 963590 
lung tumor8 / 10312777
lymphoma29 / 71755404
non-neoplasia4 / 9725041
normal111 / 336030733
ovarian tumor3 / 7668239
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer1 / 1026809
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue3 / 13106228
adrenal gland4 / 33197120
ascites0 / 400150 
bladder1 / 2975733
blood9 / 12347872
bone1 / 7165513
bone marrow4 / 4880181
brain8 / 11009897
cervix1 / 4817120
connective tissue4 / 14925526
ear0 / 162120 
embryonic tissue2 / 2157229
esophagus0 / 202090 
eye1 / 2110544
heart5 / 8962655
intestine3 / 23447212
kidney0 / 2117770 
larynx1 / 2414541
liver3 / 20774314
lung14 / 33697441
lymph27 / 44270609
lymph node22 / 91610240
mammary gland1 / 1532716
mouth4 / 6705259
muscle3 / 10771527
nerve0 / 157680 
ovary3 / 10205129
pancreas1 / 2148124
parathyroid2 / 2053997
pharynx3 / 4132872
pituitary gland0 / 165850 
placenta22 / 28082578
prostate1 / 1893455
salivary gland0 / 201550 
skin3 / 21057414
spleen4 / 5395274
stomach0 / 966190 
testis6 / 33044218
thymus11 / 81131135
thyroid0 / 474730 
tonsil9 / 16999529
trachea5 / 5241395
umbilical cord1 / 1368073
uterus7 / 23287830
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 212886_at
Cell line Expression level Expression bar
721_B_lymphoblasts126.75
Adipocyte128.15
AdrenalCortex122.9
Adrenalgland92.3
Amygdala5.65
Appendix6.6
AtrioventricularNode4.75
BDCA4+_DentriticCells190.25
Bonemarrow6.15
BronchialEpithelialCells5.3
CD105+_Endothelial10.7
CD14+_Monocytes158.9
CD19+_BCells(neg._sel.)129.65
CD33+_Myeloid98.3
CD34+16.95
CD4+_Tcells90.1
CD56+_NKCells346.4
CD71+_EarlyErythroid5.3
CD8+_Tcells133.25
CardiacMyocytes8.2
Caudatenucleus4.95
Cerebellum4.55
CerebellumPeduncles6.8
CiliaryGanglion4.5
CingulateCortex5.85
Colorectaladenocarcinoma5.95
DorsalRootGanglion4.7
FetalThyroid5.5
Fetalbrain5.35
Fetalliver4.95
Fetallung4.6
GlobusPallidus4.25
Heart47.55
Hypothalamus5.95
Kidney4.8
Leukemia_chronicMyelogenousK-5625.05
Leukemia_promyelocytic-HL-6014.05
Leukemialymphoblastic(MOLT-4)7.65
Liver7.8
Lung13.85
Lymphnode10.85
Lymphoma_burkitts(Daudi)215.65
Lymphoma_burkitts(Raji)107.4
MedullaOblongata5.05
OccipitalLobe5
OlfactoryBulb4.4
Ovary4.15
Pancreas4.9
PancreaticIslet6.25
ParietalLobe6.1
Pituitary6.55
Placenta28.45
Pons5.45
PrefrontalCortex6.7
Prostate9.85
Salivarygland4.65
SkeletalMuscle8.7
Skin4.65
SmoothMuscle6.3
Spinalcord5.95
SubthalamicNucleus5.2
SuperiorCervicalGanglion8.05
TemporalLobe5.2
Testis4.9
TestisGermCell5.35
TestisIntersitial4.85
TestisLeydigCell5.6
TestisSeminiferousTubule4.85
Thalamus5.8
Thymus11.55
Thyroid6.95
Tongue10.7
Tonsil15.4
Trachea4.7
TrigeminalGanglion6.1
Uterus8.15
UterusCorpus5.1
WholeBlood78.7
Wholebrain4.65
colon13.85
pineal_day6.8
pineal_night6.64
retina27.825
small_intestine6.2
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P213810
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.99 ± 0.87
Basal Forebrain5.45 ± 0.27
Basal Part of Pons5.62 ± 0.4
Cerebellar Cortex5.2 ± 0.69
Cerebellar Nuclei5.78 ± 0.66
Claustrum6.07 ± 0.99
Epithalamus4.92 ± 0.55
Frontal Lobe5.35 ± 0.67
Globus Pallidus6.31 ± 0.45
Hypothalamus5.31 ± 0.71
Insula5.06 ± 0.63
Limbic Lobe5.59 ± 0.66
Mesencephalon5.54 ± 0.71
Myelencephalon5.58 ± 0.68
Occipital Lobe5.56 ± 0.66
Parietal Lobe5.65 ± 0.68
Pontine Tegmentum5.48 ± 0.8
Striatum5.74 ± 0.7
Subthalamus5.52 ± 0.3
Temporal Lobe5.37 ± 0.67
Thalamus5.62 ± 0.65
White Matter5.92 ± 0.99
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Ccdc69CBCerebellum2.4
2.95
Ccdc69CTXCerebral cortex1.01
0.73
Ccdc69HIPHippocampal region2.17
3.04
Ccdc69HPFHippocampal formation1.55
1.93
Ccdc69HYHypothalamus0.44
0.37
Ccdc69LSXLateral septal complex0.1
0
Ccdc69MBMidbrain0.39
0.55
Ccdc69MYMedulla0.92
0.61
Ccdc69OLFOlfactory bulb2.14
2.09
Ccdc69PPons0.97
0.51
Ccdc69PALPallidum0.28
0.19
Ccdc69RHPRetrohippocampal region0.4
0.39
Ccdc69sAMYStriatum-like amygdalar nuclei0.48
0.23
Ccdc69STRStriatum0.62
0.34
Ccdc69STRdStriatum dorsal region0.29
0.26
Ccdc69STRvStriatum ventral region2.23
0.85
Ccdc69THThalamus0.16
0.18
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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