Annotation Detail for PHF19
Basic Information Top
| Gene Symbol: | PHF19 ( MGC131698,MGC149712,MGC149713,MGC23929,MTF2L1,PCL3 ) |
|---|---|
| Gene Full Name: | PHD finger protein 19 |
| Band: | 9q33.2 |
| Quick Links | Entrez ID:26147; OMIM: 609740; Uniprot ID:PHF19_HUMAN; ENSEMBL ID: ENSG00000119403; HGNC ID: 24566 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.460124
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 32 / 564012 | 56 |  |
| neonate | 4 / 31097 | 128 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 60 / 1939121 | 30 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 3 / 94178 | 31 | |
| cervical tumor | 2 / 34366 | 58 | |
| chondrosarcoma | 14 / 82823 | 169 | |
| colorectal tumor | 2 / 114246 | 17 | |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 6 / 119369 | 50 | |
| germ cell tumor | 7 / 263845 | 26 | |
| glioma | 8 / 106883 | 74 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 10 / 95842 | 104 | |
| liver tumor | 2 / 96359 | 20 | |
| lung tumor | 2 / 103127 | 19 | |
| lymphoma | 5 / 71755 | 69 | |
| non-neoplasia | 1 / 97250 | 10 |  |
| normal | 102 / 3360307 | 30 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 6 / 104616 | 57 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 | |
| prostate cancer | 8 / 102680 | 77 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 8 / 124949 | 64 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 3 / 90257 | 33 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 2 / 33197 | 60 | |
| ascites | 6 / 40015 | 149 | |
| bladder | 0 / 29757 | 0 | |
| blood | 7 / 123478 | 56 | |
| bone | 14 / 71655 | 195 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 20 / 1100989 | 18 | |
| cervix | 3 / 48171 | 62 | |
| connective tissue | 4 / 149255 | 26 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 3 / 215722 | 13 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 11 / 211054 | 52 | |
| heart | 3 / 89626 | 33 | |
| intestine | 7 / 234472 | 29 | |
| kidney | 4 / 211777 | 18 | |
| larynx | 0 / 24145 | 0 | |
| liver | 4 / 207743 | 19 | |
| lung | 25 / 336974 | 74 | |
| lymph | 2 / 44270 | 45 | |
| lymph node | 8 / 91610 | 87 | |
| mammary gland | 3 / 153271 | 19 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 8 / 214812 | 37 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 2 / 16585 | 120 | |
| placenta | 5 / 280825 | 17 | |
| prostate | 10 / 189345 | 52 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 12 / 210574 | 56 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 2 / 96619 | 20 | |
| testis | 18 / 330442 | 54 | |
| thymus | 7 / 81131 | 86 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 1 / 16999 | 58 | |
| trachea | 2 / 52413 | 38 | |
| umbilical cord | 3 / 13680 | 219 |  |
| uterus | 9 / 232878 | 38 | |
| vascular | 2 / 51780 | 38 | |
Microarray in - Probe name: CUST_7946_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 3.78 ± 0.71 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 3.59 ± 0.45 | |
| Basal Part of Pons | 3.76 ± 0.56 | |
| Cerebellar Cortex | 3.8 ± 0.62 | |
| Cerebellar Nuclei | 3.53 ± 0.63 | |
| Claustrum | 3.26 ± 0.8 | |
| Epithalamus | 3.62 ± 0.65 | |
| Frontal Lobe | 3.53 ± 0.61 | |
| Globus Pallidus | 3.45 ± 0.33 | |
| Hypothalamus | 3.51 ± 0.53 | |
| Insula | 3.79 ± 0.39 | |
| Limbic Lobe | 3.4 ± 0.57 | |
| Mesencephalon | 3.6 ± 0.55 | |
| Myelencephalon | 3.61 ± 0.55 | |
| Occipital Lobe | 3.46 ± 0.68 | |
| Parietal Lobe | 3.73 ± 0.51 | |
| Pontine Tegmentum | 3.63 ± 0.65 | |
| Striatum | 3.8 ± 0.54 | |
| Subthalamus | 4.12 ± 0.22 | |
| Temporal Lobe | 3.61 ± 0.49 | |
| Thalamus | 3.55 ± 0.55 | |
| White Matter | 4.49 ± 0.23 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Phf19 | CB | Cerebellum | 1.98 | |
| 4.77 | | |||
| Phf19 | CTX | Cerebral cortex | 2 | |
| 2.07 | | |||
| Phf19 | HIP | Hippocampal region | 1.46 | |
| 1.99 | | |||
| Phf19 | HPF | Hippocampal formation | 1.09 | |
| 1.44 | | |||
| Phf19 | HY | Hypothalamus | 0.51 | |
| 0.67 | | |||
| Phf19 | LSX | Lateral septal complex | 0.09 | |
| 0.08 | | |||
| Phf19 | MB | Midbrain | 1.13 | |
| 3.43 | | |||
| Phf19 | MY | Medulla | 0.25 | |
| 0.34 | | |||
| Phf19 | OLF | Olfactory bulb | 0.8 | |
| 2.01 | | |||
| Phf19 | P | Pons | 0.47 | |
| 1.01 | | |||
| Phf19 | PAL | Pallidum | 0.14 | |
| 0.11 | | |||
| Phf19 | RHP | Retrohippocampal region | 0.52 | |
| 0.78 | | |||
| Phf19 | sAMY | Striatum-like amygdalar nuclei | 0.94 | |
| 1.66 | | |||
| Phf19 | STR | Striatum | 0.21 | |
| 0.29 | | |||
| Phf19 | STRd | Striatum dorsal region | 0.14 | |
| 0.17 | | |||
| Phf19 | STRv | Striatum ventral region | 0.24 | |
| 0.27 | | |||
| Phf19 | TH | Thalamus | 0.49 | |
| 0.59 | |