Annotation Detail for IFT172
Basic Information Top
| Gene Symbol: | IFT172 ( DKFZp434A163,KIAA1179,SLB,osm-1,wim ) |
|---|---|
| Gene Full Name: | intraflagellar transport 172 homolog (Chlamydomonas) |
| Band: | 2p23.3 |
| Quick Links | Entrez ID:26160; OMIM: 607386; Uniprot ID:IF172_HUMAN; ENSEMBL ID: ENSG00000138002; HGNC ID: 30391 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.127401
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 1 / 62319 | 16 | |
| fetus | 20 / 564012 | 35 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 66 / 1939121 | 34 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 3 / 94178 | 31 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 2 / 82823 | 24 | |
| colorectal tumor | 4 / 114246 | 35 | |
| esophageal tumor | 1 / 17290 | 57 |  |
| gastrointestinal tumor | 5 / 119369 | 41 | |
| germ cell tumor | 9 / 263845 | 34 | |
| glioma | 2 / 106883 | 18 | |
| head and neck tumor | 7 / 136302 | 51 | |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 1 / 95842 | 10 |  |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 3 / 103127 | 29 | |
| lymphoma | 2 / 71755 | 27 | |
| non-neoplasia | 3 / 97250 | 30 | |
| normal | 87 / 3360307 | 25 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 2 / 102680 | 19 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 4 / 90257 | 44 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 1 / 123478 | 8 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 25 / 1100989 | 22 | |
| cervix | 4 / 48171 | 83 | |
| connective tissue | 4 / 149255 | 26 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 3 / 215722 | 13 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 10 / 211054 | 47 | |
| heart | 2 / 89626 | 22 | |
| intestine | 9 / 234472 | 38 | |
| kidney | 7 / 211777 | 33 | |
| larynx | 0 / 24145 | 0 | |
| liver | 2 / 207743 | 9 | |
| lung | 14 / 336974 | 41 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 2 / 91610 | 21 | |
| mammary gland | 4 / 153271 | 26 | |
| mouth | 5 / 67052 | 74 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 5 / 214812 | 23 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 2 / 189345 | 10 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 2 / 210574 | 9 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 7 / 96619 | 72 | |
| testis | 20 / 330442 | 60 | |
| thymus | 2 / 81131 | 24 | |
| thyroid | 2 / 47473 | 42 | |
| tonsil | 2 / 16999 | 117 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 7 / 232878 | 30 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: CUST_6290_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 6.73 ± 0.42 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 6.88 ± 0.13 | |
| Basal Part of Pons | 7.24 ± 0.19 | |
| Cerebellar Cortex | 7.07 ± 0.36 | |
| Cerebellar Nuclei | 6.92 ± 0.24 | |
| Claustrum | 6.73 ± 0.31 | |
| Epithalamus | 7.65 ± 0.6 | |
| Frontal Lobe | 6.96 ± 0.3 | |
| Globus Pallidus | 6.8 ± 0.18 | |
| Hypothalamus | 6.9 ± 0.24 | |
| Insula | 6.93 ± 0.27 | |
| Limbic Lobe | 6.97 ± 0.33 | |
| Mesencephalon | 6.88 ± 0.34 | |
| Myelencephalon | 6.97 ± 0.32 | |
| Occipital Lobe | 7.31 ± 0.35 | |
| Parietal Lobe | 7.04 ± 0.3 | |
| Pontine Tegmentum | 6.92 ± 0.25 | |
| Striatum | 6.83 ± 0.31 | |
| Subthalamus | 6.99 ± 0.16 | |
| Temporal Lobe | 6.97 ± 0.27 | |
| Thalamus | 6.86 ± 0.25 | |
| White Matter | 7.26 ± 0.33 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Ift172 | CB | Cerebellum | 56.37 | |
| 80.91 | | |||
| Ift172 | CTX | Cerebral cortex | 100 | |
| 100 | | |||
| Ift172 | HIP | Hippocampal region | 79.77 | |
| 100 | | |||
| Ift172 | HPF | Hippocampal formation | 98.88 | |
| 100 | | |||
| Ift172 | HY | Hypothalamus | 97.47 | |
| 78.26 | | |||
| Ift172 | LSX | Lateral septal complex | 100 | |
| 98.11 | | |||
| Ift172 | MB | Midbrain | 88.08 | |
| 80.6 | | |||
| Ift172 | MY | Medulla | 85.1 | |
| 96.47 | | |||
| Ift172 | OLF | Olfactory bulb | 100 | |
| 100 | | |||
| Ift172 | P | Pons | 84.19 | |
| 87.92 | | |||
| Ift172 | PAL | Pallidum | 85.43 | |
| 78.47 | | |||
| Ift172 | RHP | Retrohippocampal region | 100 | |
| 100 | | |||
| Ift172 | sAMY | Striatum-like amygdalar nuclei | 61.78 | |
| 51.16 | | |||
| Ift172 | STR | Striatum | 77.84 | |
| 60.06 | | |||
| Ift172 | STRd | Striatum dorsal region | 69.59 | |
| 54.17 | | |||
| Ift172 | STRv | Striatum ventral region | 97.25 | |
| 70.48 | | |||
| Ift172 | TH | Thalamus | 100 | |
| 100 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00499881 | 14 | 659 | 672 | FLHETNEIADQVSR | Peptide Atlas |