Annotation Detail for TSPAN17
Basic Information Top
| Gene Symbol: | TSPAN17 ( FBX23,FBXO23,MGC14859,MGC71255,TM4SF17 ) |
|---|---|
| Gene Full Name: | tetraspanin 17 |
| Band: | 5q35.2 |
| Quick Links | Entrez ID:26262; OMIM: NA; Uniprot ID:TSN17_HUMAN; ENSEMBL ID: ENSG00000048140; HGNC ID: 13594 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.532129
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 3 / 70761 | 42 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 10 / 564012 | 17 | |
| neonate | 0 / 31097 | 0 | |
| infant | 2 / 23620 | 84 |  |
| juvenile | 2 / 55556 | 35 | |
| adult | 87 / 1939121 | 44 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 11 / 94178 | 116 | |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 10 / 82823 | 120 | |
| colorectal tumor | 1 / 114246 | 8 |  |
| esophageal tumor | 2 / 17290 | 115 | |
| gastrointestinal tumor | 7 / 119369 | 58 | |
| germ cell tumor | 9 / 263845 | 34 | |
| glioma | 4 / 106883 | 37 | |
| head and neck tumor | 17 / 136302 | 124 | |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 3 / 95842 | 31 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 8 / 103127 | 77 | |
| lymphoma | 2 / 71755 | 27 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 72 / 3360307 | 21 | |
| ovarian tumor | 4 / 76682 | 52 | |
| pancreatic tumor | 8 / 104616 | 76 | |
| primitive neuroectodermal tumor of the CNS | 4 / 125680 | 31 | |
| prostate cancer | 3 / 102680 | 29 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 16 / 124949 | 128 | |
| soft tissue/muscle tissue tumor | 3 / 125191 | 23 | |
| uterine tumor | 4 / 90257 | 44 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 4 / 123478 | 32 | |
| bone | 10 / 71655 | 139 | |
| bone marrow | 2 / 48801 | 40 | |
| brain | 20 / 1100989 | 18 | |
| cervix | 6 / 48171 | 124 | |
| connective tissue | 3 / 149255 | 20 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 7 / 215722 | 32 | |
| esophagus | 2 / 20209 | 98 | |
| eye | 13 / 211054 | 61 | |
| heart | 0 / 89626 | 0 | |
| intestine | 8 / 234472 | 34 | |
| kidney | 6 / 211777 | 28 | |
| larynx | 0 / 24145 | 0 | |
| liver | 1 / 207743 | 4 | |
| lung | 23 / 336974 | 68 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 13 / 153271 | 84 | |
| mouth | 15 / 67052 | 223 |  |
| muscle | 4 / 107715 | 37 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 4 / 102051 | 39 | |
| pancreas | 8 / 214812 | 37 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 6 / 280825 | 21 | |
| prostate | 4 / 189345 | 21 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 17 / 210574 | 80 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 3 / 96619 | 31 | |
| testis | 5 / 330442 | 15 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 5 / 232878 | 21 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_1344_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 3.69 ± 0.78 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 3.18 ± 0.44 | |
| Basal Part of Pons | 3.44 ± 0.76 | |
| Cerebellar Cortex | 3.77 ± 0.46 | |
| Cerebellar Nuclei | 3.31 ± 0.58 | |
| Claustrum | 3.68 ± 0.58 | |
| Epithalamus | 3.05 ± 0.68 | |
| Frontal Lobe | 3.49 ± 0.59 | |
| Globus Pallidus | 2.31 ± 0.44 | |
| Hypothalamus | 3.12 ± 0.46 | |
| Insula | 3.51 ± 0.33 | |
| Limbic Lobe | 3.4 ± 0.63 | |
| Mesencephalon | 3.42 ± 0.71 | |
| Myelencephalon | 3.32 ± 0.58 | |
| Occipital Lobe | 3.33 ± 0.65 | |
| Parietal Lobe | 3.34 ± 0.55 | |
| Pontine Tegmentum | 3.3 ± 0.57 | |
| Striatum | 2.51 ± 0.76 | |
| Subthalamus | 3.69 ± 0.29 | |
| Temporal Lobe | 3.61 ± 0.5 | |
| Thalamus | 3.25 ± 0.65 | |
| White Matter | 2.4 ± 0.58 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Tspan17 | CB | Cerebellum | 7.56 | |
| 7.67 | | |||
| Tspan17 | CTX | Cerebral cortex | 47.88 | |
| 18.49 | | |||
| Tspan17 | HIP | Hippocampal region | 12.36 | |
| 10.58 | | |||
| Tspan17 | HPF | Hippocampal formation | 11.11 | |
| 7.47 | | |||
| Tspan17 | HY | Hypothalamus | 15.01 | |
| 4.96 | | |||
| Tspan17 | LSX | Lateral septal complex | 0.27 | |
| 0.12 | | |||
| Tspan17 | MB | Midbrain | 14.56 | |
| 7.18 | | |||
| Tspan17 | MY | Medulla | 34.81 | |
| 22.46 | | |||
| Tspan17 | OLF | Olfactory bulb | 15.37 | |
| 7.73 | | |||
| Tspan17 | P | Pons | 32.8 | |
| 19.36 | | |||
| Tspan17 | PAL | Pallidum | 14.77 | |
| 6.75 | | |||
| Tspan17 | RHP | Retrohippocampal region | 9.26 | |
| 3.27 | | |||
| Tspan17 | sAMY | Striatum-like amygdalar nuclei | 3.59 | |
| 1.54 | | |||
| Tspan17 | STR | Striatum | 3.63 | |
| 1.71 | | |||
| Tspan17 | STRd | Striatum dorsal region | 4.23 | |
| 2.13 | | |||
| Tspan17 | STRv | Striatum ventral region | 2.91 | |
| 1.06 | | |||
| Tspan17 | TH | Thalamus | 16.77 | |
| 6.27 | |