AutismKB 2.0

Annotation Detail for GATM


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Basic Information Top
Gene Symbol:GATM ( AGAT,AT )
Gene Full Name: glycine amidinotransferase (L-arginine:glycine amidinotransferase)
Band: 15q21.1
Quick LinksEntrez ID:2628; OMIM: 602360; Uniprot ID:GATM_HUMAN; ENSEMBL ID: ENSG00000171766; HGNC ID: 4175
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus51 / 56401290
neonate0 / 310970 
infant0 / 236200 
juvenile1 / 5555617
adult171 / 193912188
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma1 / 1747557
breast (mammary gland) tumor1 / 9417810
cervical tumor0 / 343660 
chondrosarcoma1 / 8282312
colorectal tumor1 / 1142468
esophageal tumor1 / 1729057
gastrointestinal tumor6 / 11936950
germ cell tumor3 / 26384511
glioma6 / 10688356
head and neck tumor0 / 1363020 
kidney tumor7 / 68959101
leukemia0 / 958420 
liver tumor20 / 96359207
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia13 / 97250133
normal608 / 3360307180
ovarian tumor4 / 7668252
pancreatic tumor2 / 10461619
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma1 / 4635621
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor6 / 12519147
uterine tumor2 / 9025722
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue2 / 13106152
adrenal gland1 / 3319730
ascites2 / 4001549
bladder13 / 29757436
blood0 / 1234780 
bone1 / 7165513
bone marrow0 / 488010 
brain233 / 1100989211
cervix0 / 481710 
connective tissue2 / 14925513
ear3 / 16212185
embryonic tissue4 / 21572218
esophagus1 / 2020949
eye3 / 21105414
heart3 / 8962633
intestine5 / 23447221
kidney215 / 2117771015
larynx1 / 2414541
liver121 / 207743582
lung9 / 33697426
lymph0 / 442700 
lymph node1 / 9161010
mammary gland2 / 15327113
mouth2 / 6705229
muscle11 / 107715102
nerve2 / 15768126
ovary4 / 10205139
pancreas46 / 214812214
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta25 / 28082589
prostate1 / 1893455
salivary gland0 / 201550 
skin2 / 2105749
spleen4 / 5395274
stomach6 / 9661962
testis36 / 330442108
thymus0 / 811310 
thyroid0 / 474730 
tonsil1 / 1699958
trachea9 / 52413171
umbilical cord0 / 136800 
uterus5 / 23287821
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 203178_at
Cell line Expression level Expression bar
721_B_lymphoblasts223.8
Adipocyte16.85
AdrenalCortex34.6
Adrenalgland26.5
Amygdala566.55
Appendix33.4
AtrioventricularNode65.05
BDCA4+_DentriticCells23.8
Bonemarrow27.55
BronchialEpithelialCells16.4
CD105+_Endothelial22.4
CD14+_Monocytes24.35
CD19+_BCells(neg._sel.)25.75
CD33+_Myeloid22.85
CD34+26
CD4+_Tcells16.3
CD56+_NKCells22.25
CD71+_EarlyErythroid20.85
CD8+_Tcells11.7
CardiacMyocytes47.05
Caudatenucleus180.5
Cerebellum99
CerebellumPeduncles97.95
CiliaryGanglion61.85
CingulateCortex98.4
Colorectaladenocarcinoma18.9
DorsalRootGanglion179.15
FetalThyroid27
Fetalbrain119.15
Fetalliver1051.9
Fetallung19.9
GlobusPallidus35.95
Heart46.6
Hypothalamus235.15
Kidney1531.8
Leukemia_chronicMyelogenousK-56216.85
Leukemia_promyelocytic-HL-6016.8
Leukemialymphoblastic(MOLT-4)11.35
Liver751.25
Lung24.15
Lymphnode31.25
Lymphoma_burkitts(Daudi)38.65
Lymphoma_burkitts(Raji)34.1
MedullaOblongata90.5
OccipitalLobe132.1
OlfactoryBulb356.55
Ovary19.65
Pancreas479.15
PancreaticIslet407.8
ParietalLobe42.75
Pituitary30
Placenta39.2
Pons34.15
PrefrontalCortex433.05
Prostate39.6
Salivarygland30.15
SkeletalMuscle43
Skin48.4
SmoothMuscle21.8
Spinalcord495.8
SubthalamicNucleus42.35
SuperiorCervicalGanglion53.6
TemporalLobe67.25
Testis143.85
TestisGermCell157.45
TestisIntersitial41.35
TestisLeydigCell48.5
TestisSeminiferousTubule55
Thalamus137.9
Thymus16.4
Thyroid227.2
Tongue28.05
Tonsil30.7
Trachea79.1
TrigeminalGanglion63.05
Uterus20.35
UterusCorpus25.3
WholeBlood19.7
Wholebrain234.85
colon38.85
pineal_day89.18
pineal_night52.28
retina221.875
small_intestine491.35
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_12554_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala8.32 ± 0.31
Basal Forebrain8.57 ± 0.28
Basal Part of Pons7.96 ± 0.33
Cerebellar Cortex8.2 ± 0.29
Cerebellar Nuclei8.48 ± 0.61
Claustrum8.09 ± 0.34
Epithalamus8.75 ± 0.23
Frontal Lobe8.06 ± 0.43
Globus Pallidus9.13 ± 0.38
Hypothalamus8.07 ± 0.55
Insula7.88 ± 0.33
Limbic Lobe7.96 ± 0.45
Mesencephalon8.26 ± 0.46
Myelencephalon8.21 ± 0.47
Occipital Lobe8.26 ± 0.48
Parietal Lobe8.11 ± 0.43
Pontine Tegmentum8.25 ± 0.44
Striatum8.36 ± 0.55
Subthalamus8.15 ± 0.31
Temporal Lobe7.98 ± 0.33
Thalamus8.35 ± 0.25
White Matter9.91 ± 0.43
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
GatmCBCerebellum55.53
67
GatmCTXCerebral cortex30.96
23.38
GatmHIPHippocampal region40.92
42.96
GatmHPFHippocampal formation39.58
36.07
GatmHYHypothalamus55.56
44.45
GatmLSXLateral septal complex45.97
38.55
GatmMBMidbrain85.53
76.94
GatmMYMedulla92.15
87.54
GatmOLFOlfactory bulb29.72
21.43
GatmPPons94.09
88.24
GatmPALPallidum70.19
60.52
GatmRHPRetrohippocampal region41.02
30.18
GatmsAMYStriatum-like amygdalar nuclei30.74
23.12
GatmSTRStriatum49.4
39.96
GatmSTRdStriatum dorsal region58.8
49.46
GatmSTRvStriatum ventral region28.12
18.82
GatmTHThalamus76.9
67.7
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00024046 14 83 96 AENACVPPFTIEVK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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