AutismKB 2.0

Annotation Detail for GCNT1


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Basic Information Top
Gene Symbol:GCNT1 ( C2GNT,C2GNT-L,C2GNT1,G6NT,MGC126335,MGC126336,NACGT2,NAGCT2 )
Gene Full Name: glucosaminyl (N-acetyl) transferase 1, core 2
Band: 9q21.13
Quick LinksEntrez ID:2650; OMIM: 600391; Uniprot ID:GCNT1_HUMAN; ENSEMBL ID: ENSG00000187210; HGNC ID: 4203
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body2 / 7076128
blastocyst0 / 623190 
fetus5 / 5640128
neonate3 / 3109796
infant0 / 236200 
juvenile0 / 555560 
adult40 / 193912120
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor1 / 9417810
cervical tumor0 / 343660 
chondrosarcoma6 / 8282372
colorectal tumor6 / 11424652
esophageal tumor0 / 172900 
gastrointestinal tumor12 / 119369100
germ cell tumor4 / 26384515
glioma3 / 10688328
head and neck tumor0 / 1363020 
kidney tumor1 / 6895914
leukemia2 / 9584220
liver tumor0 / 963590 
lung tumor5 / 10312748
lymphoma0 / 717550 
non-neoplasia1 / 9725010
normal53 / 336030715
ovarian tumor2 / 7668226
pancreatic tumor5 / 10461647
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer2 / 10268019
retinoblastoma0 / 463560 
skin tumor2 / 12494916
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites2 / 4001549
bladder0 / 297570 
blood4 / 12347832
bone7 / 7165597
bone marrow1 / 4880120
brain9 / 11009898
cervix2 / 4817141
connective tissue2 / 14925513
ear0 / 162120 
embryonic tissue3 / 21572213
esophagus0 / 202090 
eye2 / 2110549
heart0 / 896260 
intestine12 / 23447251
kidney5 / 21177723
larynx0 / 241450 
liver2 / 2077439
lung9 / 33697426
lymph0 / 442700 
lymph node6 / 9161065
mammary gland2 / 15327113
mouth1 / 6705214
muscle1 / 1077159
nerve0 / 157680 
ovary2 / 10205119
pancreas9 / 21481241
parathyroid3 / 20539146
pharynx2 / 4132848
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate2 / 18934510
salivary gland0 / 201550 
skin5 / 21057423
spleen2 / 5395237
stomach9 / 9661993
testis6 / 33044218
thymus2 / 8113124
thyroid0 / 474730 
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord0 / 136800 
uterus4 / 23287817
vascular2 / 5178038
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 205505_at
Cell line Expression level Expression bar
721_B_lymphoblasts6.95
Adipocyte5.7
AdrenalCortex6.3
Adrenalgland4.95
Amygdala6
Appendix6.1
AtrioventricularNode4.75
BDCA4+_DentriticCells7.15
Bonemarrow6
BronchialEpithelialCells5.65
CD105+_Endothelial5.8
CD14+_Monocytes6.45
CD19+_BCells(neg._sel.)20.4
CD33+_Myeloid8.75
CD34+7.6
CD4+_Tcells6.25
CD56+_NKCells9.45
CD71+_EarlyErythroid5.45
CD8+_Tcells5.5
CardiacMyocytes8
Caudatenucleus5.15
Cerebellum4.65
CerebellumPeduncles6.65
CiliaryGanglion4.05
CingulateCortex5.95
Colorectaladenocarcinoma5.75
DorsalRootGanglion4.65
FetalThyroid5.8
Fetalbrain5.65
Fetalliver5.05
Fetallung4.6
GlobusPallidus4.3
Heart8.45
Hypothalamus6.15
Kidney4.7
Leukemia_chronicMyelogenousK-5625.1
Leukemia_promyelocytic-HL-605
Leukemialymphoblastic(MOLT-4)4.55
Liver8
Lung6.25
Lymphnode4.9
Lymphoma_burkitts(Daudi)7.3
Lymphoma_burkitts(Raji)8.4
MedullaOblongata5.2
OccipitalLobe5.1
OlfactoryBulb4.5
Ovary3.95
Pancreas4.65
PancreaticIslet6.15
ParietalLobe6.15
Pituitary6.65
Placenta5.75
Pons5.45
PrefrontalCortex7.15
Prostate6.7
Salivarygland4.95
SkeletalMuscle6.95
Skin4.75
SmoothMuscle6.45
Spinalcord6.05
SubthalamicNucleus5.35
SuperiorCervicalGanglion7.1
TemporalLobe5.25
Testis4.9
TestisGermCell4.75
TestisIntersitial4.8
TestisLeydigCell5.85
TestisSeminiferousTubule4.8
Thalamus5.85
Thymus4.45
Thyroid7.85
Tongue5.8
Tonsil5.6
Trachea4.8
TrigeminalGanglion7.75
Uterus4.7
UterusCorpus5.35
WholeBlood6.4
Wholebrain4.7
colon5.8
pineal_day7.06
pineal_night6.92
retina6.925
small_intestine7.7
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P9232
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala4.29 ± 0.64
Basal Forebrain4.08 ± 0.42
Basal Part of Pons4 ± 0.54
Cerebellar Cortex5 ± 0.35
Cerebellar Nuclei4.72 ± 0.42
Claustrum4.07 ± 0.97
Epithalamus3.81 ± 0.83
Frontal Lobe4.61 ± 0.53
Globus Pallidus3.26 ± 0.51
Hypothalamus4.22 ± 0.43
Insula4.74 ± 0.54
Limbic Lobe4.54 ± 0.82
Mesencephalon4.32 ± 0.7
Myelencephalon4.39 ± 0.71
Occipital Lobe3.82 ± 0.71
Parietal Lobe4.02 ± 0.66
Pontine Tegmentum4.39 ± 0.6
Striatum4.23 ± 0.61
Subthalamus4.32 ± 0.28
Temporal Lobe4.55 ± 0.64
Thalamus4.01 ± 0.76
White Matter2.91 ± 0.5
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Gcnt1CBCerebellum1.82
2.09
Gcnt1CTXCerebral cortex1.13
1
Gcnt1HIPHippocampal region2.36
2.53
Gcnt1HPFHippocampal formation2.13
2.19
Gcnt1HYHypothalamus0.98
0.81
Gcnt1LSXLateral septal complex0.3
0.22
Gcnt1MBMidbrain0.62
0.68
Gcnt1MYMedulla1.4
1.41
Gcnt1OLFOlfactory bulb30.58
30.68
Gcnt1PPons1.95
2.41
Gcnt1PALPallidum0.84
0.92
Gcnt1RHPRetrohippocampal region1.58
1.6
Gcnt1sAMYStriatum-like amygdalar nuclei2.57
1.92
Gcnt1STRStriatum1.32
1.24
Gcnt1STRdStriatum dorsal region0.41
0.68
Gcnt1STRvStriatum ventral region4.02
2.98
Gcnt1THThalamus0.62
0.63
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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