Annotation Detail for NARF
Basic Information Top
| Gene Symbol: | NARF ( DKFZp434G0420,FLJ10067,IOP2 ) |
|---|---|
| Gene Full Name: | nuclear prelamin A recognition factor |
| Band: | 17q25.3 |
| Quick Links | Entrez ID:26502; OMIM: 605349; Uniprot ID:NARF_HUMAN; ENSEMBL ID: ENSG00000141562; HGNC ID: 29916 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.256526
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 7 / 70761 | 98 |  |
| blastocyst | 7 / 62319 | 112 | |
| fetus | 88 / 564012 | 156 | |
| neonate | 0 / 31097 | 0 | |
| infant | 10 / 23620 | 423 |  |
| juvenile | 7 / 55556 | 125 | |
| adult | 151 / 1939121 | 77 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 | |
| bladder carcinoma | 2 / 17475 | 114 | |
| breast (mammary gland) tumor | 5 / 94178 | 53 | |
| cervical tumor | 3 / 34366 | 87 | |
| chondrosarcoma | 8 / 82823 | 96 | |
| colorectal tumor | 7 / 114246 | 61 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 16 / 119369 | 134 | |
| germ cell tumor | 43 / 263845 | 162 | |
| glioma | 10 / 106883 | 93 | |
| head and neck tumor | 7 / 136302 | 51 | |
| kidney tumor | 1 / 68959 | 14 |  |
| leukemia | 11 / 95842 | 114 | |
| liver tumor | 15 / 96359 | 155 | |
| lung tumor | 23 / 103127 | 223 | |
| lymphoma | 7 / 71755 | 97 | |
| non-neoplasia | 7 / 97250 | 71 | |
| normal | 335 / 3360307 | 99 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 6 / 104616 | 57 | |
| primitive neuroectodermal tumor of the CNS | 36 / 125680 | 286 | |
| prostate cancer | 9 / 102680 | 87 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 8 / 124949 | 64 | |
| soft tissue/muscle tissue tumor | 15 / 125191 | 119 | |
| uterine tumor | 14 / 90257 | 155 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 2 / 13106 | 152 | |
| adrenal gland | 3 / 33197 | 90 | |
| ascites | 6 / 40015 | 149 | |
| bladder | 4 / 29757 | 134 | |
| blood | 23 / 123478 | 186 | |
| bone | 5 / 71655 | 69 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 153 / 1100989 | 138 | |
| cervix | 6 / 48171 | 124 | |
| connective tissue | 12 / 149255 | 80 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 26 / 215722 | 120 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 9 / 211054 | 42 | |
| heart | 10 / 89626 | 111 | |
| intestine | 21 / 234472 | 89 | |
| kidney | 7 / 211777 | 33 | |
| larynx | 0 / 24145 | 0 | |
| liver | 24 / 207743 | 115 | |
| lung | 42 / 336974 | 124 | |
| lymph | 2 / 44270 | 45 | |
| lymph node | 4 / 91610 | 43 | |
| mammary gland | 5 / 153271 | 32 | |
| mouth | 5 / 67052 | 74 | |
| muscle | 15 / 107715 | 139 | |
| nerve | 2 / 15768 | 126 | |
| ovary | 8 / 102051 | 78 | |
| pancreas | 7 / 214812 | 32 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 20 / 280825 | 71 | |
| prostate | 21 / 189345 | 110 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 12 / 210574 | 56 | |
| spleen | 10 / 53952 | 185 | |
| stomach | 11 / 96619 | 113 | |
| testis | 55 / 330442 | 166 | |
| thymus | 59 / 81131 | 727 | |
| thyroid | 4 / 47473 | 84 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 23 / 232878 | 98 | |
| vascular | 0 / 51780 | 0 |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 219862_s_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 151.25 | |
| Adipocyte | 31.55 | |
| AdrenalCortex | 55.1 | |
| Adrenalgland | 28.3 | |
| Amygdala | 70.8 | |
| Appendix | 22.65 | |
| AtrioventricularNode | 23.5 | |
| BDCA4+_DentriticCells | 147.7 | |
| Bonemarrow | 85.05 | |
| BronchialEpithelialCells | 52.15 | |
| CD105+_Endothelial | 818.7 | |
| CD14+_Monocytes | 111.15 | |
| CD19+_BCells(neg._sel.) | 132.05 | |
| CD33+_Myeloid | 118.05 | |
| CD34+ | 292.25 | |
| CD4+_Tcells | 170.35 | |
| CD56+_NKCells | 348.35 | |
| CD71+_EarlyErythroid | 1419 |  |
| CD8+_Tcells | 178.3 | |
| CardiacMyocytes | 68.9 | |
| Caudatenucleus | 57.35 | |
| Cerebellum | 49.65 | |
| CerebellumPeduncles | 73.55 | |
| CiliaryGanglion | 27.4 | |
| CingulateCortex | 68.05 | |
| Colorectaladenocarcinoma | 72.6 | |
| DorsalRootGanglion | 21.75 | |
| FetalThyroid | 60.7 | |
| Fetalbrain | 78.1 | |
| Fetalliver | 145.5 | |
| Fetallung | 79.15 | |
| GlobusPallidus | 40.4 | |
| Heart | 94.5 | |
| Hypothalamus | 71.75 | |
| Kidney | 26.65 | |
| Leukemia_chronicMyelogenousK-562 | 181.65 | |
| Leukemia_promyelocytic-HL-60 | 41.1 | |
| Leukemialymphoblastic(MOLT-4) | 246.55 | |
| Liver | 62.25 | |
| Lung | 48.4 | |
| Lymphnode | 83.55 | |
| Lymphoma_burkitts(Daudi) | 45.55 | |
| Lymphoma_burkitts(Raji) | 154.5 | |
| MedullaOblongata | 52.1 | |
| OccipitalLobe | 44.35 | |
| OlfactoryBulb | 42.6 | |
| Ovary | 21.15 | |
| Pancreas | 42.9 | |
| PancreaticIslet | 54.85 | |
| ParietalLobe | 70.5 | |
| Pituitary | 47.4 | |
| Placenta | 36.55 | |
| Pons | 45.25 | |
| PrefrontalCortex | 93.75 | |
| Prostate | 107.25 | |
| Salivarygland | 42.05 | |
| SkeletalMuscle | 72.75 | |
| Skin | 34.85 | |
| SmoothMuscle | 83.05 | |
| Spinalcord | 51.7 | |
| SubthalamicNucleus | 61.7 | |
| SuperiorCervicalGanglion | 37.8 | |
| TemporalLobe | 61.35 | |
| Testis | 193.25 | |
| TestisGermCell | 132.55 | |
| TestisIntersitial | 155.45 | |
| TestisLeydigCell | 113.25 | |
| TestisSeminiferousTubule | 146.5 | |
| Thalamus | 51.35 | |
| Thymus | 123.5 | |
| Thyroid | 66.75 | |
| Tongue | 56.85 | |
| Tonsil | 69.65 | |
| Trachea | 38.75 | |
| TrigeminalGanglion | 40.75 | |
| Uterus | 64.5 | |
| UterusCorpus | 78.35 | |
| WholeBlood | 199.45 | |
| Wholebrain | 98.1 | |
| colon | 37.3 | |
| pineal_day | 90.46 | |
| pineal_night | 88.02 | |
| retina | 71.975 | |
| small_intestine | 35.15 | |
- Probe name: A_23_P218317
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 7.97 ± 0.39 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7.85 ± 0.2 | |
| Basal Part of Pons | 8.24 ± 0.45 | |
| Cerebellar Cortex | 8.26 ± 0.29 | |
| Cerebellar Nuclei | 7.66 ± 0.32 | |
| Claustrum | 7.89 ± 0.46 | |
| Epithalamus | 8.19 ± 0.41 | |
| Frontal Lobe | 8.19 ± 0.35 | |
| Globus Pallidus | 7.11 ± 0.2 | |
| Hypothalamus | 7.86 ± 0.46 | |
| Insula | 8.17 ± 0.24 | |
| Limbic Lobe | 8.03 ± 0.41 | |
| Mesencephalon | 7.87 ± 0.31 | |
| Myelencephalon | 7.99 ± 0.41 | |
| Occipital Lobe | 7.78 ± 0.38 | |
| Parietal Lobe | 8.03 ± 0.36 | |
| Pontine Tegmentum | 7.99 ± 0.36 | |
| Striatum | 7.91 ± 0.38 | |
| Subthalamus | 7.88 ± 0.14 | |
| Temporal Lobe | 8.19 ± 0.34 | |
| Thalamus | 7.94 ± 0.27 | |
| White Matter | 7.39 ± 0.38 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Narf | CB | Cerebellum | 35.25 | |
| 82.82 | | |||
| Narf | CTX | Cerebral cortex | 100 | |
| 100 | | |||
| Narf | HIP | Hippocampal region | 100 | |
| 100 | | |||
| Narf | HPF | Hippocampal formation | 100 | |
| 100 | | |||
| Narf | HY | Hypothalamus | 93.3 | |
| 87.66 | | |||
| Narf | LSX | Lateral septal complex | 100 | |
| 88.56 | | |||
| Narf | MB | Midbrain | 73.24 | |
| 80.7 | | |||
| Narf | MY | Medulla | 50.87 | |
| 66.72 | | |||
| Narf | OLF | Olfactory bulb | 100 | |
| 100 | | |||
| Narf | P | Pons | 54.02 | |
| 68.35 | | |||
| Narf | PAL | Pallidum | 86.17 | |
| 89.04 | | |||
| Narf | RHP | Retrohippocampal region | 100 | |
| 100 | | |||
| Narf | sAMY | Striatum-like amygdalar nuclei | 84.32 | |
| 74.5 | | |||
| Narf | STR | Striatum | 100 | |
| 95.22 | | |||
| Narf | STRd | Striatum dorsal region | 100 | |
| 99.45 | | |||
| Narf | STRv | Striatum ventral region | 100 | |
| 97.66 | | |||
| Narf | TH | Thalamus | 100 | |
| 100 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00069237 | 15 | 242 | 256 | HDGASSDGHLAHIFR | Peptide Atlas |