AutismKB 2.0

Annotation Detail for CNNM1


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Basic Information Top
Gene Symbol:CNNM1 ( ACDP1,FLJ31632 )
Gene Full Name: cyclin M1
Band: 10q24.2
Quick LinksEntrez ID:26507; OMIM: 607802; Uniprot ID:CNNM1_HUMAN; ENSEMBL ID: ENSG00000119946; HGNC ID: 102
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus1 / 5640121
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult21 / 193912110
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor1 / 1142468
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor3 / 26384511
glioma0 / 1068830 
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia1 / 9584210
liver tumor2 / 9635920
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal51 / 336030715
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS2 / 12568015
prostate cancer0 / 1026800 
retinoblastoma1 / 4635621
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone1 / 7165513
bone marrow0 / 488010 
brain33 / 110098929
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye6 / 21105428
heart0 / 896260 
intestine1 / 2344724
kidney0 / 2117770 
larynx0 / 241450 
liver2 / 2077439
lung0 / 3369740 
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas1 / 2148124
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate0 / 1893450 
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach0 / 966190 
testis19 / 33044257
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 220166_at
Cell line Expression level Expression bar
721_B_lymphoblasts6.4
Adipocyte6.3
AdrenalCortex7.5
Adrenalgland5.45
Amygdala13.8
Appendix6.8
AtrioventricularNode5.8
BDCA4+_DentriticCells5.7
Bonemarrow6.4
BronchialEpithelialCells5.9
CD105+_Endothelial5.95
CD14+_Monocytes6.1
CD19+_BCells(neg._sel.)6
CD33+_Myeloid7.65
CD34+7.6
CD4+_Tcells6.45
CD56+_NKCells6.95
CD71+_EarlyErythroid5.4
CD8+_Tcells5.1
CardiacMyocytes8.75
Caudatenucleus9.1
Cerebellum9.85
CerebellumPeduncles7.9
CiliaryGanglion4.6
CingulateCortex18.6
Colorectaladenocarcinoma6.4
DorsalRootGanglion4.95
FetalThyroid6.15
Fetalbrain6.65
Fetalliver5.4
Fetallung4.75
GlobusPallidus5.15
Heart8.3
Hypothalamus7.05
Kidney5.25
Leukemia_chronicMyelogenousK-5625.75
Leukemia_promyelocytic-HL-605.15
Leukemialymphoblastic(MOLT-4)4.85
Liver9.25
Lung7
Lymphnode5.1
Lymphoma_burkitts(Daudi)7.9
Lymphoma_burkitts(Raji)9.1
MedullaOblongata12.85
OccipitalLobe7.25
OlfactoryBulb4.95
Ovary4.55
Pancreas5.05
PancreaticIslet7.5
ParietalLobe16.2
Pituitary7.45
Placenta6.5
Pons9.8
PrefrontalCortex111.7
Prostate7.4
Salivarygland5.1
SkeletalMuscle11.55
Skin5.1
SmoothMuscle6.7
Spinalcord7.35
SubthalamicNucleus6.55
SuperiorCervicalGanglion7.4
TemporalLobe8.6
Testis7.8
TestisGermCell23.75
TestisIntersitial9.7
TestisLeydigCell9.25
TestisSeminiferousTubule20.7
Thalamus17.85
Thymus4.75
Thyroid7.4
Tongue6.3
Tonsil6.2
Trachea5.35
TrigeminalGanglion7.25
Uterus4.7
UterusCorpus5.95
WholeBlood6.8
Wholebrain12.1
colon6.25
pineal_day7.24
pineal_night7.22
retina7.125
small_intestine5.7
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_447_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.35 ± 0.38
Basal Forebrain6.08 ± 0.27
Basal Part of Pons6.18 ± 0.41
Cerebellar Cortex5.75 ± 0.35
Cerebellar Nuclei5.94 ± 0.42
Claustrum6.8 ± 0.48
Epithalamus5.15 ± 0.63
Frontal Lobe5.97 ± 0.36
Globus Pallidus5.64 ± 0.23
Hypothalamus5.86 ± 0.38
Insula5.99 ± 0.31
Limbic Lobe6.17 ± 0.45
Mesencephalon5.93 ± 0.52
Myelencephalon6.05 ± 0.46
Occipital Lobe6.46 ± 0.59
Parietal Lobe6.17 ± 0.42
Pontine Tegmentum6 ± 0.44
Striatum6.68 ± 0.38
Subthalamus5.21 ± 0.25
Temporal Lobe5.97 ± 0.35
Thalamus6.08 ± 0.33
White Matter4.37 ± 0.31
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Cnnm1CBCerebellum55.2
100
Cnnm1CTXCerebral cortex100
100
Cnnm1HIPHippocampal region100
100
Cnnm1HPFHippocampal formation100
100
Cnnm1HYHypothalamus47.28
42.22
Cnnm1LSXLateral septal complex99.07
100
Cnnm1MBMidbrain68.52
72.07
Cnnm1MYMedulla61.29
83.5
Cnnm1OLFOlfactory bulb100
100
Cnnm1PPons54.92
69.15
Cnnm1PALPallidum62.4
67
Cnnm1RHPRetrohippocampal region100
100
Cnnm1sAMYStriatum-like amygdalar nuclei79.08
72.16
Cnnm1STRStriatum81.67
70.14
Cnnm1STRdStriatum dorsal region75.41
63.14
Cnnm1STRvStriatum ventral region94.15
81.87
Cnnm1THThalamus84.86
88.91
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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