AutismKB 2.0

Annotation Detail for GFER


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Basic Information Top
Gene Symbol:GFER ( ALR,ERV1,HERV1,HPO,HPO1,HPO2,HSS )
Gene Full Name: growth factor, augmenter of liver regeneration
Band: 16p13.3
Quick LinksEntrez ID:2671; OMIM: 600924; Uniprot ID:ALR_HUMAN; ENSEMBL ID: ENSG00000127554; HGNC ID: 4236
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body2 / 7076128
blastocyst1 / 6231916
fetus13 / 56401223
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult52 / 193912126
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor1 / 9417810
cervical tumor1 / 3436629
chondrosarcoma5 / 8282360
colorectal tumor4 / 11424635
esophageal tumor0 / 172900 
gastrointestinal tumor4 / 11936933
germ cell tumor4 / 26384515
glioma9 / 10688384
head and neck tumor6 / 13630244
kidney tumor2 / 6895929
leukemia4 / 9584241
liver tumor1 / 9635910
lung tumor1 / 1031279
lymphoma1 / 7175513
non-neoplasia2 / 9725020
normal59 / 336030717
ovarian tumor3 / 7668239
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer1 / 1026809
retinoblastoma0 / 463560 
skin tumor3 / 12494924
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor2 / 9025722
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites1 / 4001524
bladder0 / 297570 
blood1 / 1234788
bone5 / 7165569
bone marrow0 / 488010 
brain23 / 110098920
cervix2 / 4817141
connective tissue1 / 1492556
ear0 / 162120 
embryonic tissue3 / 21572213
esophagus0 / 202090 
eye14 / 21105466
heart0 / 896260 
intestine8 / 23447234
kidney7 / 21177733
larynx0 / 241450 
liver1 / 2077434
lung11 / 33697432
lymph0 / 442700 
lymph node3 / 9161032
mammary gland1 / 1532716
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary3 / 10205129
pancreas7 / 21481232
parathyroid1 / 2053948
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta3 / 28082510
prostate4 / 18934521
salivary gland6 / 20155297
skin5 / 21057423
spleen0 / 539520 
stomach2 / 9661920
testis3 / 3304429
thymus2 / 8113124
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus3 / 23287812
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 204660_at
Cell line Expression level Expression bar
721_B_lymphoblasts45.25
Adipocyte41.4
AdrenalCortex63.85
Adrenalgland38.95
Amygdala43.1
Appendix38.6
AtrioventricularNode38.9
BDCA4+_DentriticCells37.15
Bonemarrow43.2
BronchialEpithelialCells41.05
CD105+_Endothelial42.25
CD14+_Monocytes49.4
CD19+_BCells(neg._sel.)42.65
CD33+_Myeloid51.45
CD34+48.15
CD4+_Tcells48.85
CD56+_NKCells36.4
CD71+_EarlyErythroid39.75
CD8+_Tcells37.75
CardiacMyocytes50
Caudatenucleus37.15
Cerebellum34.25
CerebellumPeduncles51.65
CiliaryGanglion37.3
CingulateCortex46.85
Colorectaladenocarcinoma41.85
DorsalRootGanglion44.3
FetalThyroid40.7
Fetalbrain40.1
Fetalliver38.1
Fetallung38.65
GlobusPallidus67.85
Heart43.75
Hypothalamus44.15
Kidney34.65
Leukemia_chronicMyelogenousK-56237.65
Leukemia_promyelocytic-HL-6036.85
Leukemialymphoblastic(MOLT-4)34.4
Liver57
Lung45.45
Lymphnode37.85
Lymphoma_burkitts(Daudi)56.35
Lymphoma_burkitts(Raji)61.75
MedullaOblongata37.1
OccipitalLobe44.7
OlfactoryBulb38.6
Ovary27.55
Pancreas44.95
PancreaticIslet46.4
ParietalLobe64.85
Pituitary50.55
Placenta41.2
Pons41.15
PrefrontalCortex51.6
Prostate47.45
Salivarygland49.2
SkeletalMuscle65.6
Skin56.25
SmoothMuscle47.4
Spinalcord43.9
SubthalamicNucleus62.35
SuperiorCervicalGanglion51.15
TemporalLobe38.55
Testis35.85
TestisGermCell35.85
TestisIntersitial43.4
TestisLeydigCell42.4
TestisSeminiferousTubule36.2
Thalamus43.05
Thymus32.1
Thyroid52.4
Tongue50.35
Tonsil43.4
Trachea38.55
TrigeminalGanglion44.45
Uterus34.1
UterusCorpus38.85
WholeBlood45.45
Wholebrain27.1
colon38.45
pineal_day60.1
pineal_night50.06
retina49.6
small_intestine39.4
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P206484
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.57 ± 0.41
Basal Forebrain6.97 ± 0.27
Basal Part of Pons7.16 ± 0.21
Cerebellar Cortex6.84 ± 0.28
Cerebellar Nuclei7.04 ± 0.31
Claustrum7.07 ± 0.25
Epithalamus6.96 ± 0.16
Frontal Lobe7.05 ± 0.3
Globus Pallidus7.19 ± 0.45
Hypothalamus7.11 ± 0.18
Insula6.95 ± 0.27
Limbic Lobe6.88 ± 0.36
Mesencephalon6.87 ± 0.35
Myelencephalon6.92 ± 0.32
Occipital Lobe6.58 ± 0.24
Parietal Lobe6.87 ± 0.27
Pontine Tegmentum6.9 ± 0.31
Striatum6.7 ± 0.24
Subthalamus7.16 ± 0.16
Temporal Lobe6.9 ± 0.29
Thalamus6.94 ± 0.27
White Matter7.08 ± 0.15
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
GferCBCerebellum2.2
2.92
GferCTXCerebral cortex1.07
1.46
GferHIPHippocampal region1.11
1.78
GferHPFHippocampal formation1.08
1.57
GferHYHypothalamus0.1
0.24
GferLSXLateral septal complex0.03
0
GferMBMidbrain0.6
0.97
GferMYMedulla2.55
2.55
GferOLFOlfactory bulb1.26
2.21
GferPPons0.69
0.65
GferPALPallidum0.55
0.45
GferRHPRetrohippocampal region1.08
1.29
GfersAMYStriatum-like amygdalar nuclei0.38
0.28
GferSTRStriatum0.34
0.36
GferSTRdStriatum dorsal region0.4
0.49
GferSTRvStriatum ventral region0.39
0.26
GferTHThalamus0.67
0.9
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00133640 16 164 179 ACFTQWLCHLHNEVNR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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