Annotation Detail for GGT1
Basic Information Top
| Gene Symbol: | GGT1 ( CD224,D22S672,D22S732,GGT,GGT 1,GTG,MGC96892,MGC96904,MGC96963 ) |
|---|---|
| Gene Full Name: | gamma-glutamyltransferase 1 |
| Band: | 22q11.23 |
| Quick Links | Entrez ID:2678; OMIM: 612346; Uniprot ID:GGT1_HUMAN; ENSEMBL ID: ENSG00000100031; HGNC ID: 4250 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.645535
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 1 / 62319 | 16 |  |
| fetus | 5 / 564012 | 8 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 48 / 1939121 | 24 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 7 / 94178 | 74 |  |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 3 / 114246 | 26 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 1 / 263845 | 3 | |
| glioma | 2 / 106883 | 18 | |
| head and neck tumor | 3 / 136302 | 22 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 7 / 95842 | 73 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 3 / 103127 | 29 | |
| lymphoma | 2 / 71755 | 27 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 36 / 3360307 | 10 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 6 / 102680 | 58 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 5 / 90257 | 55 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 10 / 123478 | 80 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 5 / 1100989 | 4 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 1 / 215722 | 4 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 2 / 211054 | 9 | |
| heart | 2 / 89626 | 22 | |
| intestine | 4 / 234472 | 17 | |
| kidney | 1 / 211777 | 4 | |
| larynx | 0 / 24145 | 0 | |
| liver | 1 / 207743 | 4 | |
| lung | 8 / 336974 | 23 | |
| lymph | 2 / 44270 | 45 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 12 / 153271 | 78 | |
| mouth | 3 / 67052 | 44 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 1 / 214812 | 4 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 10 / 189345 | 52 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 3 / 330442 | 9 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 5 / 232878 | 21 | |
| vascular | 0 / 51780 | 0 |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 211417_x_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 118.4 | |
| Adipocyte | 4.7 | |
| AdrenalCortex | 5.2 | |
| Adrenalgland | 3.7 | |
| Amygdala | 4.15 | |
| Appendix | 5.4 | |
| AtrioventricularNode | 3.25 | |
| BDCA4+_DentriticCells | 6.4 | |
| Bonemarrow | 4.5 | |
| BronchialEpithelialCells | 4.35 | |
| CD105+_Endothelial | 4.45 | |
| CD14+_Monocytes | 11.95 | |
| CD19+_BCells(neg._sel.) | 4.9 | |
| CD33+_Myeloid | 10.65 | |
| CD34+ | 6.35 | |
| CD4+_Tcells | 5.55 | |
| CD56+_NKCells | 5.3 | |
| CD71+_EarlyErythroid | 3.95 | |
| CD8+_Tcells | 5.2 | |
| CardiacMyocytes | 5.45 | |
| Caudatenucleus | 3.95 | |
| Cerebellum | 3.55 | |
| CerebellumPeduncles | 5.05 | |
| CiliaryGanglion | 3.2 | |
| CingulateCortex | 4.45 | |
| Colorectaladenocarcinoma | 4.25 | |
| DorsalRootGanglion | 3.4 | |
| FetalThyroid | 12.95 | |
| Fetalbrain | 4.4 | |
| Fetalliver | 5.75 | |
| Fetallung | 4.35 | |
| GlobusPallidus | 3.2 | |
| Heart | 6.75 | |
| Hypothalamus | 4.75 | |
| Kidney | 274.15 |  |
| Leukemia_chronicMyelogenousK-562 | 3.95 | |
| Leukemia_promyelocytic-HL-60 | 3.9 | |
| Leukemialymphoblastic(MOLT-4) | 3.5 | |
| Liver | 144.75 | |
| Lung | 463.25 | |
| Lymphnode | 3.8 | |
| Lymphoma_burkitts(Daudi) | 5.6 | |
| Lymphoma_burkitts(Raji) | 55.85 | |
| MedullaOblongata | 3.95 | |
| OccipitalLobe | 3.9 | |
| OlfactoryBulb | 3.45 | |
| Ovary | 2.95 | |
| Pancreas | 5.5 | |
| PancreaticIslet | 5.15 | |
| ParietalLobe | 4.6 | |
| Pituitary | 5.15 | |
| Placenta | 5.35 | |
| Pons | 4.2 | |
| PrefrontalCortex | 5.5 | |
| Prostate | 172.8 | |
| Salivarygland | 3.5 | |
| SkeletalMuscle | 5.85 | |
| Skin | 3.55 | |
| SmoothMuscle | 4.9 | |
| Spinalcord | 4.65 | |
| SubthalamicNucleus | 4.6 | |
| SuperiorCervicalGanglion | 5.25 | |
| TemporalLobe | 4 | |
| Testis | 127.8 | |
| TestisGermCell | 14.1 | |
| TestisIntersitial | 49.6 | |
| TestisLeydigCell | 17.95 | |
| TestisSeminiferousTubule | 66.45 | |
| Thalamus | 4.45 | |
| Thymus | 3.9 | |
| Thyroid | 68.8 | |
| Tongue | 4.25 | |
| Tonsil | 4.7 | |
| Trachea | 3.75 | |
| TrigeminalGanglion | 4.3 | |
| Uterus | 3.55 | |
| UterusCorpus | 3.9 | |
| WholeBlood | 8.25 | |
| Wholebrain | 3.8 | |
| colon | 5.2 | |
| pineal_day | 5.12 | |
| pineal_night | 5.16 | |
| retina | 5.2 | |
| small_intestine | 33.2 | |
- Probe name: A_23_P154986
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.88 ± 0.63 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.65 ± 0.39 | |
| Basal Part of Pons | 4.7 ± 0.24 | |
| Cerebellar Cortex | 4.63 ± 0.44 | |
| Cerebellar Nuclei | 4.96 ± 0.28 | |
| Claustrum | 5.16 ± 0.69 | |
| Epithalamus | 4.45 ± 0.23 | |
| Frontal Lobe | 4.72 ± 0.38 | |
| Globus Pallidus | 5.25 ± 0.29 | |
| Hypothalamus | 4.85 ± 0.21 | |
| Insula | 4.63 ± 0.41 | |
| Limbic Lobe | 4.93 ± 0.5 | |
| Mesencephalon | 5.04 ± 0.38 | |
| Myelencephalon | 4.88 ± 0.46 | |
| Occipital Lobe | 5.14 ± 0.52 | |
| Parietal Lobe | 4.95 ± 0.41 | |
| Pontine Tegmentum | 4.72 ± 0.43 | |
| Striatum | 5.06 ± 0.37 | |
| Subthalamus | 5.13 ± 0.04 | |
| Temporal Lobe | 4.74 ± 0.45 | |
| Thalamus | 4.76 ± 0.41 | |
| White Matter | 5.44 ± 0.86 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Ggt1 | CB | Cerebellum | 0.99 | |
| 1.82 | | |||
| Ggt1 | CTX | Cerebral cortex | 0.54 | |
| 0.73 | | |||
| Ggt1 | HIP | Hippocampal region | 0.4 | |
| 0.72 | | |||
| Ggt1 | HPF | Hippocampal formation | 0.73 | |
| 0.94 | | |||
| Ggt1 | HY | Hypothalamus | 0.43 | |
| 0.48 | | |||
| Ggt1 | LSX | Lateral septal complex | 0.14 | |
| 0.09 | | |||
| Ggt1 | MB | Midbrain | 0.64 | |
| 1.34 | | |||
| Ggt1 | MY | Medulla | 0.62 | |
| 1.05 | | |||
| Ggt1 | OLF | Olfactory bulb | 3.74 | |
| 3.41 | | |||
| Ggt1 | P | Pons | 1.51 | |
| 3.1 | | |||
| Ggt1 | PAL | Pallidum | 0.2 | |
| 0.19 | | |||
| Ggt1 | RHP | Retrohippocampal region | 1.46 | |
| 1.38 | | |||
| Ggt1 | sAMY | Striatum-like amygdalar nuclei | 0.65 | |
| 0.52 | | |||
| Ggt1 | STR | Striatum | 0.47 | |
| 0.51 | | |||
| Ggt1 | STRd | Striatum dorsal region | 0.35 | |
| 0.41 | | |||
| Ggt1 | STRv | Striatum ventral region | 0.94 | |
| 1.22 | | |||
| Ggt1 | TH | Thalamus | 0.25 | |
| 0.27 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00011788 | 15 | 183 | 197 | TVIEQQPVLCEVFCR | Peptide Atlas |