AutismKB 2.0

Annotation Detail for RANBP6


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Basic Information Top
Gene Symbol:RANBP6 ( FLJ54311 )
Gene Full Name: RAN binding protein 6
Band: 9p24.1
Quick LinksEntrez ID:26953; OMIM: NA; Uniprot ID:RNBP6_HUMAN; ENSEMBL ID: ENSG00000137040; HGNC ID: 9851
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst2 / 6231932
fetus32 / 56401256
neonate0 / 310970 
infant2 / 2362084
juvenile1 / 5555617
adult39 / 193912120
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor1 / 9417810
cervical tumor0 / 343660 
chondrosarcoma1 / 8282312
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor2 / 11936916
germ cell tumor8 / 26384530
glioma1 / 1068839
head and neck tumor5 / 13630236
kidney tumor2 / 6895929
leukemia2 / 9584220
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma1 / 7175513
non-neoplasia6 / 9725061
normal139 / 336030741
ovarian tumor0 / 766820 
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS7 / 12568055
prostate cancer4 / 10268038
retinoblastoma0 / 463560 
skin tumor2 / 12494916
soft tissue/muscle tissue tumor5 / 12519139
uterine tumor4 / 9025744
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland1 / 3319730
ascites1 / 4001524
bladder3 / 29757100
blood2 / 12347816
bone3 / 7165541
bone marrow3 / 4880161
brain88 / 110098979
cervix0 / 481710 
connective tissue2 / 14925513
ear0 / 162120 
embryonic tissue4 / 21572218
esophagus0 / 202090 
eye5 / 21105423
heart1 / 8962611
intestine0 / 2344720 
kidney4 / 21177718
larynx0 / 241450 
liver0 / 2077430 
lung5 / 33697414
lymph1 / 4427022
lymph node4 / 9161043
mammary gland3 / 15327119
mouth5 / 6705274
muscle3 / 10771527
nerve1 / 1576863
ovary0 / 1020510 
pancreas1 / 2148124
parathyroid1 / 2053948
pharynx1 / 4132824
pituitary gland0 / 165850 
placenta6 / 28082521
prostate7 / 18934536
salivary gland0 / 201550 
skin4 / 21057418
spleen0 / 539520 
stomach1 / 9661910
testis15 / 33044245
thymus10 / 81131123
thyroid1 / 4747321
tonsil0 / 169990 
trachea11 / 52413209
umbilical cord0 / 136800 
uterus10 / 23287842
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 213019_at
Cell line Expression level Expression bar
721_B_lymphoblasts38.25
Adipocyte21.9
AdrenalCortex35.85
Adrenalgland22.3
Amygdala120.6
Appendix26.1
AtrioventricularNode31.65
BDCA4+_DentriticCells37.75
Bonemarrow15.55
BronchialEpithelialCells23
CD105+_Endothelial134.75
CD14+_Monocytes40.7
CD19+_BCells(neg._sel.)91.35
CD33+_Myeloid92.65
CD34+106.7
CD4+_Tcells34.5
CD56+_NKCells91
CD71+_EarlyErythroid22.5
CD8+_Tcells57.25
CardiacMyocytes24.75
Caudatenucleus33.15
Cerebellum13.05
CerebellumPeduncles36.4
CiliaryGanglion38.65
CingulateCortex85.15
Colorectaladenocarcinoma10.7
DorsalRootGanglion31.85
FetalThyroid21.05
Fetalbrain84.85
Fetalliver20.1
Fetallung15.5
GlobusPallidus23.2
Heart22.9
Hypothalamus114.95
Kidney20.2
Leukemia_chronicMyelogenousK-56219.2
Leukemia_promyelocytic-HL-6053.25
Leukemialymphoblastic(MOLT-4)50.35
Liver16.5
Lung10.6
Lymphnode32.1
Lymphoma_burkitts(Daudi)31.6
Lymphoma_burkitts(Raji)21.9
MedullaOblongata33.05
OccipitalLobe63.75
OlfactoryBulb18.75
Ovary15.45
Pancreas18.95
PancreaticIslet28.45
ParietalLobe40.8
Pituitary35
Placenta14.25
Pons27.45
PrefrontalCortex356.6
Prostate23.6
Salivarygland25.85
SkeletalMuscle26.3
Skin20
SmoothMuscle33.15
Spinalcord57.35
SubthalamicNucleus66.65
SuperiorCervicalGanglion41.95
TemporalLobe47
Testis12.75
TestisGermCell18.2
TestisIntersitial19.65
TestisLeydigCell22.45
TestisSeminiferousTubule22.5
Thalamus75.25
Thymus14.4
Thyroid83
Tongue22.25
Tonsil21.95
Trachea15.05
TrigeminalGanglion34.2
Uterus29
UterusCorpus21.2
WholeBlood38.3
Wholebrain23.75
colon26.15
pineal_day279.7
pineal_night243.1
retina24.625
small_intestine18.2
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_8371_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.94 ± 0.42
Basal Forebrain7.13 ± 0.32
Basal Part of Pons7.51 ± 0.23
Cerebellar Cortex7.34 ± 0.34
Cerebellar Nuclei7.82 ± 0.39
Claustrum7.25 ± 0.49
Epithalamus7.21 ± 0.33
Frontal Lobe7.34 ± 0.43
Globus Pallidus7.03 ± 0.4
Hypothalamus7.49 ± 0.21
Insula7.14 ± 0.23
Limbic Lobe7.22 ± 0.44
Mesencephalon7.31 ± 0.47
Myelencephalon7.2 ± 0.43
Occipital Lobe7.33 ± 0.32
Parietal Lobe7.45 ± 0.39
Pontine Tegmentum7.3 ± 0.35
Striatum6.65 ± 0.33
Subthalamus7.74 ± 0.48
Temporal Lobe7.26 ± 0.36
Thalamus7.27 ± 0.26
White Matter7.22 ± 0.23
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Ranbp6CBCerebellum0.44
0.83
Ranbp6CTXCerebral cortex0.3
0.45
Ranbp6HIPHippocampal region1.54
2.96
Ranbp6HPFHippocampal formation1.06
1.89
Ranbp6HYHypothalamus0.08
0.09
Ranbp6LSXLateral septal complex0.16
0.16
Ranbp6MBMidbrain0.24
0.5
Ranbp6MYMedulla0.45
1.05
Ranbp6OLFOlfactory bulb0.15
0.2
Ranbp6PPons0.2
0.41
Ranbp6PALPallidum0.14
0.23
Ranbp6RHPRetrohippocampal region0.1
0.17
Ranbp6sAMYStriatum-like amygdalar nuclei0.24
0.22
Ranbp6STRStriatum0.11
0.19
Ranbp6STRdStriatum dorsal region0.09
0.2
Ranbp6STRvStriatum ventral region0.15
0.18
Ranbp6THThalamus0.7
1.04
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00380992 11 247 257 SLVEIADTVPK Peptide Atlas
RNBP6_HUMAN_0 0 0 0 FVPYYDIFMPSLK PRIDE
RNBP6_HUMAN_534 13 534 546 FVPYYDIFMPSLK PRIDE
RNBP6_HUMAN_535 13 535 547 FVPYYDIFMPSLK PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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