Annotation Detail for COPG2
Basic Information Top
| Gene Symbol: | COPG2 ( 2-COP,DKFZp761N09121,FLJ11781 ) |
|---|---|
| Gene Full Name: | coatomer protein complex, subunit gamma 2 |
| Band: | 7q32.2 |
| Quick Links | Entrez ID:26958; OMIM: 604355; Uniprot ID:COPG2_HUMAN; ENSEMBL ID: ; HGNC ID: 2237 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.6421
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 2 / 62319 | 32 | |
| fetus | 24 / 564012 | 42 | |
| neonate | 1 / 31097 | 32 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 43 / 1939121 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 4 / 94178 | 42 | |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 2 / 82823 | 24 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 2 / 119369 | 16 | |
| germ cell tumor | 11 / 263845 | 41 | |
| glioma | 4 / 106883 | 37 | |
| head and neck tumor | 11 / 136302 | 80 |  |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 1 / 95842 | 10 |  |
| liver tumor | 2 / 96359 | 20 | |
| lung tumor | 2 / 103127 | 19 | |
| lymphoma | 3 / 71755 | 41 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 105 / 3360307 | 31 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 8 / 125680 | 63 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 8 / 46356 | 172 | |
| skin tumor | 3 / 124949 | 24 | |
| soft tissue/muscle tissue tumor | 3 / 125191 | 23 | |
| uterine tumor | 5 / 90257 | 55 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 1 / 123478 | 8 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 44 / 1100989 | 39 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 6 / 215722 | 27 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 15 / 211054 | 71 | |
| heart | 1 / 89626 | 11 | |
| intestine | 3 / 234472 | 12 | |
| kidney | 1 / 211777 | 4 | |
| larynx | 6 / 24145 | 248 |  |
| liver | 2 / 207743 | 9 | |
| lung | 10 / 336974 | 29 | |
| lymph | 2 / 44270 | 45 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 4 / 153271 | 26 | |
| mouth | 4 / 67052 | 59 | |
| muscle | 4 / 107715 | 37 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 3 / 214812 | 13 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 4 / 280825 | 14 | |
| prostate | 5 / 189345 | 26 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 4 / 210574 | 18 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 3 / 96619 | 31 | |
| testis | 23 / 330442 | 69 | |
| thymus | 6 / 81131 | 73 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 6 / 232878 | 25 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_6503_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.68 ± 0.31 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.98 ± 0.25 | |
| Basal Part of Pons | 6.01 ± 0.37 | |
| Cerebellar Cortex | 6.29 ± 0.25 | |
| Cerebellar Nuclei | 6.2 ± 0.22 | |
| Claustrum | 5.58 ± 0.76 | |
| Epithalamus | 5.99 ± 0.53 | |
| Frontal Lobe | 5.99 ± 0.34 | |
| Globus Pallidus | 5.79 ± 0.34 | |
| Hypothalamus | 6.55 ± 0.26 | |
| Insula | 5.88 ± 0.31 | |
| Limbic Lobe | 5.73 ± 0.36 | |
| Mesencephalon | 5.87 ± 0.36 | |
| Myelencephalon | 5.88 ± 0.41 | |
| Occipital Lobe | 5.67 ± 0.39 | |
| Parietal Lobe | 5.94 ± 0.38 | |
| Pontine Tegmentum | 5.97 ± 0.47 | |
| Striatum | 5.64 ± 0.37 | |
| Subthalamus | 6.18 ± 0.14 | |
| Temporal Lobe | 5.97 ± 0.36 | |
| Thalamus | 5.95 ± 0.36 | |
| White Matter | 6.01 ± 0.2 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Copg2 | CB | Cerebellum | 24.87 | |
| 31.15 | | |||
| Copg2 | CTX | Cerebral cortex | 44.76 | |
| 36.21 | | |||
| Copg2 | HIP | Hippocampal region | 41.21 | |
| 68.97 | | |||
| Copg2 | HPF | Hippocampal formation | 40.95 | |
| 53.49 | | |||
| Copg2 | HY | Hypothalamus | 33.98 | |
| 30.23 | | |||
| Copg2 | LSX | Lateral septal complex | 17.98 | |
| 13.87 | | |||
| Copg2 | MB | Midbrain | 37.37 | |
| 38.46 | | |||
| Copg2 | MY | Medulla | 37.79 | |
| 52.6 | | |||
| Copg2 | OLF | Olfactory bulb | 35.84 | |
| 31.8 | | |||
| Copg2 | P | Pons | 40 | |
| 50.42 | | |||
| Copg2 | PAL | Pallidum | 39.54 | |
| 39.24 | | |||
| Copg2 | RHP | Retrohippocampal region | 42.16 | |
| 37.25 | | |||
| Copg2 | sAMY | Striatum-like amygdalar nuclei | 38.08 | |
| 30.19 | | |||
| Copg2 | STR | Striatum | 23.59 | |
| 18.41 | | |||
| Copg2 | STRd | Striatum dorsal region | 19.25 | |
| 15.14 | | |||
| Copg2 | STRv | Striatum ventral region | 33.72 | |
| 24.69 | | |||
| Copg2 | TH | Thalamus | 38.85 | |
| 34.93 | |