AutismKB 2.0

Annotation Detail for SND1


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Basic Information Top
Gene Symbol:SND1 ( TDRD11,p100 )
Gene Full Name: staphylococcal nuclease and tudor domain containing 1
Band: 7q32.1
Quick LinksEntrez ID:27044; OMIM: 602181; Uniprot ID:SND1_HUMAN; ENSEMBL ID: ENSG00000197157; HGNC ID: 30646
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body29 / 70761409
blastocyst16 / 62319256
fetus122 / 564012216
neonate9 / 31097289
infant1 / 2362042
juvenile19 / 55556341
adult557 / 1939121287
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor5 / 12794390
bladder carcinoma0 / 174750 
breast (mammary gland) tumor45 / 94178477
cervical tumor10 / 34366290
chondrosarcoma15 / 82823181
colorectal tumor52 / 114246455
esophageal tumor4 / 17290231
gastrointestinal tumor28 / 119369234
germ cell tumor199 / 263845754
glioma19 / 106883177
head and neck tumor52 / 136302381
kidney tumor23 / 68959333
leukemia36 / 95842375
liver tumor53 / 96359550
lung tumor38 / 103127368
lymphoma26 / 71755362
non-neoplasia45 / 97250462
normal914 / 3360307271
ovarian tumor10 / 76682130
pancreatic tumor29 / 104616277
primitive neuroectodermal tumor of the CNS48 / 125680381
prostate cancer24 / 102680233
retinoblastoma21 / 46356453
skin tumor61 / 124949488
soft tissue/muscle tissue tumor32 / 125191255
uterine tumor25 / 90257276
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue2 / 13106152
adrenal gland9 / 33197271
ascites17 / 40015424
bladder4 / 29757134
blood29 / 123478234
bone9 / 71655125
bone marrow20 / 48801409
brain404 / 1100989366
cervix10 / 48171207
connective tissue54 / 149255361
ear2 / 16212123
embryonic tissue56 / 215722259
esophagus4 / 20209197
eye38 / 211054180
heart6 / 8962666
intestine78 / 234472332
kidney47 / 211777221
larynx2 / 2414582
liver59 / 207743284
lung153 / 336974454
lymph22 / 44270496
lymph node7 / 9161076
mammary gland53 / 153271345
mouth43 / 67052641
muscle22 / 107715204
nerve4 / 15768253
ovary14 / 102051137
pancreas42 / 214812195
parathyroid0 / 205390 
pharynx2 / 4132848
pituitary gland4 / 16585241
placenta138 / 280825491
prostate40 / 189345211
salivary gland5 / 20155248
skin77 / 210574365
spleen15 / 53952278
stomach11 / 96619113
testis269 / 330442814
thymus48 / 81131591
thyroid13 / 47473273
tonsil5 / 16999294
trachea119 / 524132270
umbilical cord14 / 136801023
uterus84 / 232878360
vascular12 / 51780231
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 201622_at
Cell line Expression level Expression bar
721_B_lymphoblasts616.25
Adipocyte155.9
AdrenalCortex101.5
Adrenalgland139.7
Amygdala44.4
Appendix86.2
AtrioventricularNode141.2
BDCA4+_DentriticCells597.6
Bonemarrow165.75
BronchialEpithelialCells303.1
CD105+_Endothelial178.8
CD14+_Monocytes282.65
CD19+_BCells(neg._sel.)253
CD33+_Myeloid353.9
CD34+433.5
CD4+_Tcells216.25
CD56+_NKCells220.45
CD71+_EarlyErythroid131.8
CD8+_Tcells170.35
CardiacMyocytes97.4
Caudatenucleus99.45
Cerebellum93.1
CerebellumPeduncles209.55
CiliaryGanglion90.2
CingulateCortex134.45
Colorectaladenocarcinoma233.5
DorsalRootGanglion101.95
FetalThyroid121.9
Fetalbrain103.3
Fetalliver120.45
Fetallung101.5
GlobusPallidus83.65
Heart137.25
Hypothalamus135.45
Kidney105.65
Leukemia_chronicMyelogenousK-562375.5
Leukemia_promyelocytic-HL-60242.15
Leukemialymphoblastic(MOLT-4)271.7
Liver206.6
Lung136.1
Lymphnode113.65
Lymphoma_burkitts(Daudi)481.75
Lymphoma_burkitts(Raji)254.55
MedullaOblongata70.55
OccipitalLobe91.4
OlfactoryBulb97.95
Ovary124.65
Pancreas265.95
PancreaticIslet415.95
ParietalLobe120.8
Pituitary211.15
Placenta149.65
Pons110
PrefrontalCortex117.45
Prostate218.05
Salivarygland138.3
SkeletalMuscle53.8
Skin86.6
SmoothMuscle293.25
Spinalcord144.4
SubthalamicNucleus104.5
SuperiorCervicalGanglion86.3
TemporalLobe105.55
Testis148.35
TestisGermCell137.35
TestisIntersitial111.1
TestisLeydigCell93
TestisSeminiferousTubule107.4
Thalamus117.95
Thymus110.6
Thyroid104.2
Tongue108.25
Tonsil113.1
Trachea133.1
TrigeminalGanglion108.35
Uterus104.65
UterusCorpus51.65
WholeBlood89.95
Wholebrain88.65
colon84.65
pineal_day207.12
pineal_night199.02
retina235.725
small_intestine100.1
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_10327_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala4.93 ± 0.49
Basal Forebrain4.63 ± 0.41
Basal Part of Pons5.17 ± 0.34
Cerebellar Cortex5.27 ± 0.38
Cerebellar Nuclei4.79 ± 0.44
Claustrum5 ± 0.6
Epithalamus5.27 ± 0.47
Frontal Lobe5.09 ± 0.5
Globus Pallidus4.86 ± 0.28
Hypothalamus5.22 ± 0.74
Insula5.16 ± 0.28
Limbic Lobe4.99 ± 0.49
Mesencephalon4.8 ± 0.55
Myelencephalon4.99 ± 0.54
Occipital Lobe4.74 ± 0.54
Parietal Lobe4.91 ± 0.44
Pontine Tegmentum4.99 ± 0.46
Striatum4.61 ± 0.51
Subthalamus4.59 ± 0.36
Temporal Lobe5.08 ± 0.47
Thalamus4.96 ± 0.48
White Matter4.81 ± 0.5
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
AL033314CBCerebellum16.47
28.28
AL033314CTXCerebral cortex100
100
AL033314HIPHippocampal region100
100
AL033314HPFHippocampal formation100
100
AL033314HYHypothalamus98.62
98.76
AL033314LSXLateral septal complex100
100
AL033314MBMidbrain63.01
64.78
AL033314MYMedulla22.86
33.63
AL033314OLFOlfactory bulb67.17
70.36
AL033314PPons42.98
56.99
AL033314PALPallidum82.36
87.23
AL033314RHPRetrohippocampal region78.79
79.27
AL033314sAMYStriatum-like amygdalar nuclei100
100
AL033314STRStriatum100
100
AL033314STRdStriatum dorsal region100
100
AL033314STRvStriatum ventral region100
88.55
AL033314THThalamus100
100
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00000608 17 141 157 ANNPEQNRLSECEEQAK Peptide Atlas
SND1_HUMAN_0 0 0 0 VITEYLNAQESAK PRIDE
SND1_HUMAN_0 0 0 0 VMQVLNADAIVVK PRIDE
SND1_HUMAN_108 9 108 116 EYGMIYLGK PRIDE
SND1_HUMAN_161 14 161 174 KGMWSEGNGSHTIR PRIDE
SND1_HUMAN_162 13 162 174 GMWSEGNGSHTIR PRIDE
SND1_HUMAN_2 20 2 21 ASSAQSGGSSGGPAVPTVQR PRIDE
SND1_HUMAN_209 18 209 226 ALLLPDYYLVTVMLSGIK PRIDE
SND1_HUMAN_233 16 233 248 EADGSETPEPFAAEAK PRIDE
SND1_HUMAN_234 16 234 249 EADGSETPEPFAAEAK PRIDE
SND1_HUMAN_346 13 346 358 VMQVLNADAIVVK PRIDE
SND1_HUMAN_347 13 347 359 VMQVLNADAIVVK PRIDE
SND1_HUMAN_390 14 390 403 LRPLYDIPYMFEAR PRIDE
SND1_HUMAN_392 12 392 403 PLYDIPYMFEAR PRIDE
SND1_HUMAN_424 15 424 438 PASPATETVPAFSER PRIDE
SND1_HUMAN_472 13 472 484 SSHYDELLAAEAR PRIDE
SND1_HUMAN_473 13 473 485 SSHYDELLAAEAR PRIDE
SND1_HUMAN_48 14 48 61 QINLSNIRAGNLAR PRIDE
SND1_HUMAN_516 8 516 523 QFLPFLQR PRIDE
SND1_HUMAN_527 13 527 539 SEAVVEYVFSGSR PRIDE
SND1_HUMAN_592 11 592 602 EVEVEVESMDK PRIDE
SND1_HUMAN_715 16 715 730 NDIASHPPVEGSYAPR PRIDE
SND1_HUMAN_72 12 72 83 DTPDEPWAFPAR PRIDE
SND1_HUMAN_873 13 873 885 VITEYLNAQESAK PRIDE
SND1_HUMAN_900 11 900 910 ADDADEFGYSR PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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