AutismKB 2.0

Annotation Detail for LAMP3


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Basic Information Top
Gene Symbol:LAMP3 ( CD208,DC-LAMP,DCLAMP,LAMP,TSC403 )
Gene Full Name: lysosomal-associated membrane protein 3
Band: 3q27.1
Quick LinksEntrez ID:27074; OMIM: 605883; Uniprot ID:LAMP3_HUMAN; ENSEMBL ID: ENSG00000078081; HGNC ID: 14582
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst1 / 6231916
fetus2 / 5640123
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult30 / 193912115
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor1 / 9417810
cervical tumor0 / 343660 
chondrosarcoma2 / 8282324
colorectal tumor0 / 1142460 
esophageal tumor2 / 17290115
gastrointestinal tumor3 / 11936925
germ cell tumor8 / 26384530
glioma0 / 1068830 
head and neck tumor3 / 13630222
kidney tumor1 / 6895914
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia2 / 9725020
normal57 / 336030716
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder1 / 2975733
blood1 / 1234788
bone0 / 716550 
bone marrow0 / 488010 
brain2 / 11009891
cervix0 / 481710 
connective tissue4 / 14925526
ear0 / 162120 
embryonic tissue1 / 2157224
esophagus2 / 2020998
eye0 / 2110540 
heart0 / 896260 
intestine0 / 2344720 
kidney2 / 2117779
larynx1 / 2414541
liver1 / 2077434
lung27 / 33697480
lymph0 / 442700 
lymph node1 / 9161010
mammary gland2 / 15327113
mouth2 / 6705229
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx4 / 4132896
pituitary gland0 / 165850 
placenta1 / 2808253
prostate0 / 1893450 
salivary gland1 / 2015549
skin0 / 2105740 
spleen1 / 5395218
stomach3 / 9661931
testis30 / 33044290
thymus14 / 81131172
thyroid0 / 474730 
tonsil0 / 169990 
trachea3 / 5241357
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 205569_at
Cell line Expression level Expression bar
721_B_lymphoblasts6.25
Adipocyte5.15
AdrenalCortex5.5
Adrenalgland4.4
Amygdala5.4
Appendix6.7
AtrioventricularNode4.1
BDCA4+_DentriticCells5.45
Bonemarrow5.15
BronchialEpithelialCells5.15
CD105+_Endothelial5.25
CD14+_Monocytes5.45
CD19+_BCells(neg._sel.)5.5
CD33+_Myeloid6.65
CD34+6.55
CD4+_Tcells5.65
CD56+_NKCells6.15
CD71+_EarlyErythroid4.85
CD8+_Tcells5
CardiacMyocytes6.7
Caudatenucleus4.65
Cerebellum4.2
CerebellumPeduncles5.9
CiliaryGanglion3.9
CingulateCortex5.35
Colorectaladenocarcinoma24.5
DorsalRootGanglion4.3
FetalThyroid5.05
Fetalbrain5.1
Fetalliver4.55
Fetallung764.35
GlobusPallidus3.85
Heart6.7
Hypothalamus5.65
Kidney4.4
Leukemia_chronicMyelogenousK-5624.7
Leukemia_promyelocytic-HL-604.6
Leukemialymphoblastic(MOLT-4)4.2
Liver6.9
Lung1321.25
Lymphnode164.2
Lymphoma_burkitts(Daudi)6.65
Lymphoma_burkitts(Raji)7.3
MedullaOblongata7.2
OccipitalLobe4.7
OlfactoryBulb4.15
Ovary3.45
Pancreas5
PancreaticIslet5.95
ParietalLobe5.55
Pituitary6.1
Placenta5.3
Pons5.05
PrefrontalCortex6.45
Prostate6.15
Salivarygland18.15
SkeletalMuscle6.35
Skin4.2
SmoothMuscle5.8
Spinalcord8
SubthalamicNucleus4.7
SuperiorCervicalGanglion7.9
TemporalLobe5.35
Testis12.2
TestisGermCell5.65
TestisIntersitial7.45
TestisLeydigCell8.2
TestisSeminiferousTubule7.05
Thalamus5.3
Thymus45.25
Thyroid6.45
Tongue5.15
Tonsil25.6
Trachea6
TrigeminalGanglion10.75
Uterus4.2
UterusCorpus11.85
WholeBlood5.65
Wholebrain4.35
colon5.2
pineal_day6.4
pineal_night6.3
retina6.425
small_intestine5
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_14290_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.22 ± 1.08
Basal Forebrain1.82 ± 0.19
Basal Part of Pons1.38 ± 0.37
Cerebellar Cortex1.63 ± 0.77
Cerebellar Nuclei2.04 ± 0.76
Claustrum2.69 ± 0.95
Epithalamus1.47 ± 0.82
Frontal Lobe1.6 ± 0.62
Globus Pallidus2.34 ± 0.33
Hypothalamus1.9 ± 0.67
Insula1.58 ± 0.43
Limbic Lobe1.73 ± 0.63
Mesencephalon1.93 ± 0.74
Myelencephalon1.79 ± 0.67
Occipital Lobe1.75 ± 0.66
Parietal Lobe1.83 ± 0.79
Pontine Tegmentum1.86 ± 0.67
Striatum1.87 ± 0.49
Subthalamus1.91 ± 0.68
Temporal Lobe1.72 ± 0.84
Thalamus1.74 ± 0.64
White Matter2.11 ± 0.16
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00040666 15 324 338 HAVVMFQTAVGHSFK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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