AutismKB 2.0

Annotation Detail for CYTH4


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Basic Information Top
Gene Symbol:CYTH4 ( CYT4,DJ63G5.1,PSCD4 )
Gene Full Name: cytohesin 4
Band: 22q13.1
Quick LinksEntrez ID:27128; OMIM: 606514; Uniprot ID:CYH4_HUMAN; ENSEMBL ID: ENSG00000100055; HGNC ID: 9505
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus4 / 5640127
neonate2 / 3109764
infant0 / 236200 
juvenile0 / 555560 
adult68 / 193912135
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma2 / 8282324
colorectal tumor1 / 1142468
esophageal tumor0 / 172900 
gastrointestinal tumor1 / 1193698
germ cell tumor1 / 2638453
glioma4 / 10688337
head and neck tumor1 / 1363027
kidney tumor3 / 6895943
leukemia17 / 95842177
liver tumor2 / 9635920
lung tumor0 / 1031270 
lymphoma5 / 7175569
non-neoplasia14 / 97250143
normal121 / 336030736
ovarian tumor0 / 766820 
pancreatic tumor2 / 10461619
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor1 / 1249498
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood35 / 123478283
bone1 / 7165513
bone marrow3 / 4880161
brain15 / 110098913
cervix0 / 481710 
connective tissue16 / 149255107
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye4 / 21105418
heart0 / 896260 
intestine4 / 23447217
kidney4 / 21177718
larynx0 / 241450 
liver2 / 2077439
lung5 / 33697414
lymph0 / 442700 
lymph node7 / 9161076
mammary gland1 / 1532716
mouth3 / 6705244
muscle2 / 10771518
nerve0 / 157680 
ovary1 / 1020519
pancreas3 / 21481213
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta30 / 280825106
prostate0 / 1893450 
salivary gland0 / 201550 
skin1 / 2105744
spleen15 / 53952278
stomach2 / 9661920
testis0 / 3304420 
thymus23 / 81131283
thyroid0 / 474730 
tonsil0 / 169990 
trachea3 / 5241357
umbilical cord0 / 136800 
uterus4 / 23287817
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 219183_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts20.8
Adipocyte6.75
AdrenalCortex8.55
Adrenalgland5.65
Amygdala7.25
Appendix6.7
AtrioventricularNode5.25
BDCA4+_DentriticCells471.15
Bonemarrow6.75
BronchialEpithelialCells6.8
CD105+_Endothelial6.9
CD14+_Monocytes196.15
CD19+_BCells(neg._sel.)66.8
CD33+_Myeloid197.45
CD34+21.05
CD4+_Tcells134.05
CD56+_NKCells218.8
CD71+_EarlyErythroid6.35
CD8+_Tcells152.6
CardiacMyocytes8.5
Caudatenucleus6.05
Cerebellum5.5
CerebellumPeduncles7.6
CiliaryGanglion4.7
CingulateCortex6.9
Colorectaladenocarcinoma6.85
DorsalRootGanglion5.1
FetalThyroid6.65
Fetalbrain6.85
Fetalliver5.75
Fetallung5.7
GlobusPallidus5.8
Heart8.5
Hypothalamus7.2
Kidney5.4
Leukemia_chronicMyelogenousK-5626.15
Leukemia_promyelocytic-HL-606
Leukemialymphoblastic(MOLT-4)5.5
Liver8.9
Lung7.65
Lymphnode23.1
Lymphoma_burkitts(Daudi)8.65
Lymphoma_burkitts(Raji)21.5
MedullaOblongata6.25
OccipitalLobe5.35
OlfactoryBulb5.35
Ovary4.5
Pancreas5.6
PancreaticIslet7.35
ParietalLobe7.1
Pituitary9.8
Placenta6.25
Pons6.45
PrefrontalCortex7.6
Prostate8.1
Salivarygland6.15
SkeletalMuscle9.3
Skin5.15
SmoothMuscle7.8
Spinalcord7.25
SubthalamicNucleus6.1
SuperiorCervicalGanglion7.55
TemporalLobe6.15
Testis5.9
TestisGermCell5.65
TestisIntersitial6.05
TestisLeydigCell6.7
TestisSeminiferousTubule5.85
Thalamus6.9
Thymus12.95
Thyroid8.65
Tongue7.5
Tonsil14.85
Trachea5.7
TrigeminalGanglion6.6
Uterus5.6
UterusCorpus6
WholeBlood495.35
Wholebrain5.85
colon6.9
pineal_day8.64
pineal_night8.36
retina8.45
small_intestine6.75
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P74559
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.08 ± 1.07
Basal Forebrain1.67 ± 0.33
Basal Part of Pons1.89 ± 0.62
Cerebellar Cortex1.32 ± 0.53
Cerebellar Nuclei2.09 ± 0.6
Claustrum2.45 ± 0.85
Epithalamus2.03 ± 0.58
Frontal Lobe1.57 ± 0.76
Globus Pallidus3.14 ± 0.83
Hypothalamus1.83 ± 0.86
Insula2.07 ± 0.81
Limbic Lobe1.85 ± 0.82
Mesencephalon1.89 ± 0.79
Myelencephalon1.89 ± 0.71
Occipital Lobe1.57 ± 0.71
Parietal Lobe1.93 ± 0.9
Pontine Tegmentum1.73 ± 0.72
Striatum2.07 ± 0.64
Subthalamus1.87 ± 0.78
Temporal Lobe1.8 ± 0.77
Thalamus1.86 ± 0.63
White Matter3.09 ± 0.63
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Pscd4CBCerebellum0.47
1.04
Pscd4CTXCerebral cortex0.42
0.71
Pscd4HIPHippocampal region0.13
0.26
Pscd4HPFHippocampal formation0.2
0.33
Pscd4HYHypothalamus0.1
0.09
Pscd4LSXLateral septal complex0.06
0.13
Pscd4MBMidbrain0.54
1.13
Pscd4MYMedulla0.98
1
Pscd4OLFOlfactory bulb1
1.8
Pscd4PPons0.58
1.23
Pscd4PALPallidum0.04
0.04
Pscd4RHPRetrohippocampal region0.31
0.42
Pscd4sAMYStriatum-like amygdalar nuclei0.08
0.04
Pscd4STRStriatum0.11
0.14
Pscd4STRdStriatum dorsal region0.15
0.18
Pscd4STRvStriatum ventral region0.04
0.1
Pscd4THThalamus0.27
0.3
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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