AutismKB 2.0

Annotation Detail for TUBGCP4


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Basic Information Top
Gene Symbol:TUBGCP4 ( 76P,FLJ14797,GCP4 )
Gene Full Name: tubulin, gamma complex associated protein 4
Band: 15q15.3
Quick LinksEntrez ID:27229; OMIM: 609610; Uniprot ID:GCP4_HUMAN; ENSEMBL ID: ENSG00000137822; HGNC ID: 16691
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body2 / 7076128
blastocyst1 / 6231916
fetus31 / 56401254
neonate1 / 3109732
infant2 / 2362084
juvenile5 / 5555689
adult64 / 193912133
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor5 / 9417853
cervical tumor1 / 3436629
chondrosarcoma2 / 8282324
colorectal tumor5 / 11424643
esophageal tumor1 / 1729057
gastrointestinal tumor6 / 11936950
germ cell tumor22 / 26384583
glioma3 / 10688328
head and neck tumor6 / 13630244
kidney tumor1 / 6895914
leukemia4 / 9584241
liver tumor1 / 9635910
lung tumor6 / 10312758
lymphoma4 / 7175555
non-neoplasia1 / 9725010
normal116 / 336030734
ovarian tumor4 / 7668252
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS7 / 12568055
prostate cancer1 / 1026809
retinoblastoma2 / 4635643
skin tumor5 / 12494940
soft tissue/muscle tissue tumor2 / 12519115
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites1 / 4001524
bladder1 / 2975733
blood4 / 12347832
bone3 / 7165541
bone marrow2 / 4880140
brain44 / 110098939
cervix1 / 4817120
connective tissue1 / 1492556
ear0 / 162120 
embryonic tissue4 / 21572218
esophagus1 / 2020949
eye12 / 21105456
heart2 / 8962622
intestine8 / 23447234
kidney7 / 21177733
larynx1 / 2414541
liver7 / 20774333
lung15 / 33697444
lymph0 / 442700 
lymph node2 / 9161021
mammary gland5 / 15327132
mouth5 / 6705274
muscle1 / 1077159
nerve3 / 15768190
ovary4 / 10205139
pancreas4 / 21481218
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland2 / 16585120
placenta9 / 28082532
prostate2 / 18934510
salivary gland0 / 201550 
skin7 / 21057433
spleen1 / 5395218
stomach5 / 9661951
testis18 / 33044254
thymus7 / 8113186
thyroid1 / 4747321
tonsil0 / 169990 
trachea2 / 5241338
umbilical cord0 / 136800 
uterus4 / 23287817
vascular2 / 5178038
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 211337_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts67.65
Adipocyte6.1
AdrenalCortex6.6
Adrenalgland4.85
Amygdala8.3
Appendix8.55
AtrioventricularNode5.4
BDCA4+_DentriticCells7.55
Bonemarrow6.65
BronchialEpithelialCells7.1
CD105+_Endothelial17.6
CD14+_Monocytes6.25
CD19+_BCells(neg._sel.)6.7
CD33+_Myeloid7.65
CD34+20
CD4+_Tcells9.15
CD56+_NKCells7.55
CD71+_EarlyErythroid23
CD8+_Tcells7.6
CardiacMyocytes8.05
Caudatenucleus6
Cerebellum7.45
CerebellumPeduncles9.9
CiliaryGanglion4.95
CingulateCortex8.5
Colorectaladenocarcinoma8.7
DorsalRootGanglion5.75
FetalThyroid5.75
Fetalbrain7.15
Fetalliver16.65
Fetallung5.15
GlobusPallidus5.3
Heart7.95
Hypothalamus6.95
Kidney5.5
Leukemia_chronicMyelogenousK-5626.3
Leukemia_promyelocytic-HL-608.35
Leukemialymphoblastic(MOLT-4)9
Liver8.8
Lung6.5
Lymphnode5.75
Lymphoma_burkitts(Daudi)9
Lymphoma_burkitts(Raji)9.5
MedullaOblongata6.2
OccipitalLobe8.5
OlfactoryBulb5.1
Ovary4.45
Pancreas5.1
PancreaticIslet6.65
ParietalLobe7.55
Pituitary8.05
Placenta6.05
Pons12.7
PrefrontalCortex8.4
Prostate7.4
Salivarygland5.4
SkeletalMuscle7.05
Skin6.15
SmoothMuscle7.7
Spinalcord6.35
SubthalamicNucleus6.5
SuperiorCervicalGanglion9.8
TemporalLobe6.05
Testis9.15
TestisGermCell6.55
TestisIntersitial7.55
TestisLeydigCell6.7
TestisSeminiferousTubule9.35
Thalamus6.8
Thymus5.3
Thyroid7.95
Tongue6.6
Tonsil6
Trachea5.2
TrigeminalGanglion9.9
Uterus5.15
UterusCorpus5.4
WholeBlood6.35
Wholebrain6.75
colon6.35
pineal_day9.84
pineal_night10.24
retina8.175
small_intestine6.1
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_5287_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.48 ± 0.71
Basal Forebrain2.95 ± 0.38
Basal Part of Pons3.05 ± 0.54
Cerebellar Cortex3.57 ± 0.4
Cerebellar Nuclei3.19 ± 0.47
Claustrum3.35 ± 0.6
Epithalamus2.68 ± 0.73
Frontal Lobe3.29 ± 0.58
Globus Pallidus2.61 ± 0.87
Hypothalamus3.05 ± 0.44
Insula3.29 ± 0.56
Limbic Lobe3.27 ± 0.56
Mesencephalon3.4 ± 0.6
Myelencephalon3.31 ± 0.65
Occipital Lobe3.64 ± 0.45
Parietal Lobe3.24 ± 0.65
Pontine Tegmentum3.3 ± 0.59
Striatum3.41 ± 0.61
Subthalamus3.52 ± 0.43
Temporal Lobe3.25 ± 0.61
Thalamus3.14 ± 0.66
White Matter2.97 ± 1.25
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00499519 22 23 44 SGLQVSQDFPFLHPSETSVLNR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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