Annotation Detail for GPKOW
Basic Information Top
| Gene Symbol: | GPKOW ( GPATC5,GPATCH5,Spp2,T54 ) |
|---|---|
| Gene Full Name: | G patch domain and KOW motifs |
| Band: | Xp11.23 |
| Quick Links | Entrez ID:27238; OMIM: NA; Uniprot ID:GPKOW_HUMAN; ENSEMBL ID: ENSG00000068394; HGNC ID: 30677 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.503666
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 3 / 70761 | 42 |  |
| blastocyst | 9 / 62319 | 144 |  |
| fetus | 17 / 564012 | 30 | |
| neonate | 0 / 31097 | 0 | |
| infant | 3 / 23620 | 127 | |
| juvenile | 3 / 55556 | 53 | |
| adult | 100 / 1939121 | 51 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 7 / 94178 | 74 | |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 5 / 82823 | 60 | |
| colorectal tumor | 7 / 114246 | 61 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 12 / 119369 | 100 | |
| germ cell tumor | 14 / 263845 | 53 | |
| glioma | 3 / 106883 | 28 | |
| head and neck tumor | 9 / 136302 | 66 | |
| kidney tumor | 3 / 68959 | 43 | |
| leukemia | 7 / 95842 | 73 | |
| liver tumor | 2 / 96359 | 20 | |
| lung tumor | 12 / 103127 | 116 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 120 / 3360307 | 35 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 4 / 104616 | 38 | |
| primitive neuroectodermal tumor of the CNS | 15 / 125680 | 119 | |
| prostate cancer | 3 / 102680 | 29 | |
| retinoblastoma | 2 / 46356 | 43 | |
| skin tumor | 7 / 124949 | 56 | |
| soft tissue/muscle tissue tumor | 4 / 125191 | 31 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 7 / 40015 | 174 | |
| bladder | 0 / 29757 | 0 | |
| blood | 16 / 123478 | 129 | |
| bone | 5 / 71655 | 69 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 28 / 1100989 | 25 | |
| cervix | 9 / 48171 | 186 | |
| connective tissue | 5 / 149255 | 33 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 16 / 215722 | 74 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 8 / 211054 | 37 | |
| heart | 0 / 89626 | 0 | |
| intestine | 12 / 234472 | 51 | |
| kidney | 5 / 211777 | 23 | |
| larynx | 1 / 24145 | 41 | |
| liver | 9 / 207743 | 43 | |
| lung | 21 / 336974 | 62 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 2 / 91610 | 21 | |
| mammary gland | 7 / 153271 | 45 | |
| mouth | 6 / 67052 | 89 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 2 / 15768 | 126 | |
| ovary | 4 / 102051 | 39 | |
| pancreas | 12 / 214812 | 55 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 2 / 16585 | 120 | |
| placenta | 22 / 280825 | 78 | |
| prostate | 5 / 189345 | 26 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 10 / 210574 | 47 | |
| spleen | 3 / 53952 | 55 | |
| stomach | 1 / 96619 | 10 |  |
| testis | 2 / 330442 | 6 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 1 / 16999 | 58 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 6 / 232878 | 25 | |
| vascular | 0 / 51780 | 0 |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 203776_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 25.3 | |
| Adipocyte | 4.75 | |
| AdrenalCortex | 5.3 | |
| Adrenalgland | 4.45 | |
| Amygdala | 7.15 | |
| Appendix | 5.2 | |
| AtrioventricularNode | 3.55 | |
| BDCA4+_DentriticCells | 16.2 | |
| Bonemarrow | 5.1 | |
| BronchialEpithelialCells | 5.8 | |
| CD105+_Endothelial | 24.2 | |
| CD14+_Monocytes | 12.65 | |
| CD19+_BCells(neg._sel.) | 10.2 | |
| CD33+_Myeloid | 12.8 | |
| CD34+ | 11.65 | |
| CD4+_Tcells | 19.8 | |
| CD56+_NKCells | 26.15 | |
| CD71+_EarlyErythroid | 35.55 | |
| CD8+_Tcells | 10.7 | |
| CardiacMyocytes | 9.65 | |
| Caudatenucleus | 4.75 | |
| Cerebellum | 5.4 | |
| CerebellumPeduncles | 8.55 | |
| CiliaryGanglion | 3.35 | |
| CingulateCortex | 5.3 | |
| Colorectaladenocarcinoma | 8.75 | |
| DorsalRootGanglion | 3.5 | |
| FetalThyroid | 5.65 | |
| Fetalbrain | 6.3 | |
| Fetalliver | 4.4 | |
| Fetallung | 4.35 | |
| GlobusPallidus | 3.85 | |
| Heart | 6.75 | |
| Hypothalamus | 11.5 | |
| Kidney | 4 | |
| Leukemia_chronicMyelogenousK-562 | 4.8 | |
| Leukemia_promyelocytic-HL-60 | 4.65 | |
| Leukemialymphoblastic(MOLT-4) | 4.8 | |
| Liver | 6.7 | |
| Lung | 8 | |
| Lymphnode | 4.4 | |
| Lymphoma_burkitts(Daudi) | 6.5 | |
| Lymphoma_burkitts(Raji) | 7.3 | |
| MedullaOblongata | 4.75 | |
| OccipitalLobe | 5.1 | |
| OlfactoryBulb | 4.1 | |
| Ovary | 3.4 | |
| Pancreas | 4.05 | |
| PancreaticIslet | 7 | |
| ParietalLobe | 5.45 | |
| Pituitary | 6.05 | |
| Placenta | 6.15 | |
| Pons | 5.2 | |
| PrefrontalCortex | 6.55 | |
| Prostate | 6.05 | |
| Salivarygland | 3.55 | |
| SkeletalMuscle | 5.45 | |
| Skin | 3.65 | |
| SmoothMuscle | 6.7 | |
| Spinalcord | 7.35 | |
| SubthalamicNucleus | 4.65 | |
| SuperiorCervicalGanglion | 5.85 | |
| TemporalLobe | 4.9 | |
| Testis | 4.4 | |
| TestisGermCell | 3.9 | |
| TestisIntersitial | 4.05 | |
| TestisLeydigCell | 5.05 | |
| TestisSeminiferousTubule | 4.45 | |
| Thalamus | 9.95 | |
| Thymus | 5 | |
| Thyroid | 7 | |
| Tongue | 5.1 | |
| Tonsil | 5.1 | |
| Trachea | 4 | |
| TrigeminalGanglion | 5.25 | |
| Uterus | 4.15 | |
| UterusCorpus | 4.65 | |
| WholeBlood | 8.3 | |
| Wholebrain | 10.3 | |
| colon | 5.3 | |
| pineal_day | 15.86 | |
| pineal_night | 11.22 | |
| retina | 7.775 | |
| small_intestine | 4.9 | |
- Probe name: CUST_10563_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.49 ± 0.6 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 6.05 ± 0.18 | |
| Basal Part of Pons | 6.2 ± 0.59 | |
| Cerebellar Cortex | 6.21 ± 0.47 | |
| Cerebellar Nuclei | 5.7 ± 0.56 | |
| Claustrum | 5.6 ± 0.91 | |
| Epithalamus | 6.41 ± 0.46 | |
| Frontal Lobe | 6.18 ± 0.46 | |
| Globus Pallidus | 6.17 ± 0.17 | |
| Hypothalamus | 6.4 ± 0.42 | |
| Insula | 6.23 ± 0.26 | |
| Limbic Lobe | 5.7 ± 0.54 | |
| Mesencephalon | 5.94 ± 0.45 | |
| Myelencephalon | 5.93 ± 0.56 | |
| Occipital Lobe | 5.34 ± 0.52 | |
| Parietal Lobe | 5.92 ± 0.45 | |
| Pontine Tegmentum | 5.94 ± 0.46 | |
| Striatum | 5.46 ± 0.38 | |
| Subthalamus | 5.98 ± 0.54 | |
| Temporal Lobe | 6.17 ± 0.41 | |
| Thalamus | 6.03 ± 0.42 | |
| White Matter | 6.67 ± 0.26 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Gpkow | CB | Cerebellum | 5.05 | |
| 5.54 | | |||
| Gpkow | CTX | Cerebral cortex | 3.64 | |
| 2.68 | | |||
| Gpkow | HIP | Hippocampal region | 7.62 | |
| 7.05 | | |||
| Gpkow | HPF | Hippocampal formation | 8.07 | |
| 6.97 | | |||
| Gpkow | HY | Hypothalamus | 0.15 | |
| 0.14 | | |||
| Gpkow | LSX | Lateral septal complex | 1.08 | |
| 1.03 | | |||
| Gpkow | MB | Midbrain | 1.31 | |
| 1.35 | | |||
| Gpkow | MY | Medulla | 2.79 | |
| 2.83 | | |||
| Gpkow | OLF | Olfactory bulb | 3.84 | |
| 2.9 | | |||
| Gpkow | P | Pons | 1.39 | |
| 1.54 | | |||
| Gpkow | PAL | Pallidum | 1.34 | |
| 1.34 | | |||
| Gpkow | RHP | Retrohippocampal region | 9.24 | |
| 7.15 | | |||
| Gpkow | sAMY | Striatum-like amygdalar nuclei | 0.78 | |
| 0.47 | | |||
| Gpkow | STR | Striatum | 0.75 | |
| 0.65 | | |||
| Gpkow | STRd | Striatum dorsal region | 0.85 | |
| 0.77 | | |||
| Gpkow | STRv | Striatum ventral region | 0.24 | |
| 0.29 | | |||
| Gpkow | TH | Thalamus | 1.87 | |
| 1.93 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00066131 | 20 | 6 | 25 | EGVLPLTAASTAPISFGFTR | Peptide Atlas |