AutismKB 2.0

Annotation Detail for AHDC1


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Basic Information Top
Gene Symbol:AHDC1 ( CL23945,DJ159A19.3,RP1-159A19.1 )
Gene Full Name: AT hook, DNA binding motif, containing 1
Band: 1p36.11-p35.3
Quick LinksEntrez ID:27245; OMIM: NA; Uniprot ID:AHDC1_HUMAN; ENSEMBL ID: ENSG00000126705; HGNC ID: 25230
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body2 / 7076128
blastocyst3 / 6231948
fetus13 / 56401223
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult46 / 193912123
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma1 / 1747557
breast (mammary gland) tumor0 / 941780 
cervical tumor1 / 3436629
chondrosarcoma4 / 8282348
colorectal tumor6 / 11424652
esophageal tumor0 / 172900 
gastrointestinal tumor3 / 11936925
germ cell tumor3 / 26384511
glioma2 / 10688318
head and neck tumor2 / 13630214
kidney tumor2 / 6895929
leukemia2 / 9584220
liver tumor0 / 963590 
lung tumor3 / 10312729
lymphoma0 / 717550 
non-neoplasia2 / 9725020
normal69 / 336030720
ovarian tumor2 / 7668226
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma1 / 4635621
skin tumor2 / 12494916
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor6 / 9025766
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder1 / 2975733
blood0 / 1234780 
bone0 / 716550 
bone marrow1 / 4880120
brain17 / 110098915
cervix2 / 4817141
connective tissue4 / 14925526
ear0 / 162120 
embryonic tissue8 / 21572237
esophagus0 / 202090 
eye10 / 21105447
heart3 / 8962633
intestine7 / 23447229
kidney4 / 21177718
larynx1 / 2414541
liver0 / 2077430 
lung3 / 3369748
lymph0 / 442700 
lymph node3 / 9161032
mammary gland0 / 1532710 
mouth0 / 670520 
muscle1 / 1077159
nerve0 / 157680 
ovary5 / 10205148
pancreas7 / 21481232
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta2 / 2808257
prostate2 / 18934510
salivary gland0 / 201550 
skin5 / 21057423
spleen1 / 5395218
stomach2 / 9661920
testis1 / 3304423
thymus0 / 811310 
thyroid1 / 4747321
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus7 / 23287830
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 205002_at
Cell line Expression level Expression bar
721_B_lymphoblasts7.5
Adipocyte6.8
AdrenalCortex9.45
Adrenalgland6.6
Amygdala7.35
Appendix7.3
AtrioventricularNode5.1
BDCA4+_DentriticCells7
Bonemarrow7.1
BronchialEpithelialCells6.95
CD105+_Endothelial6.65
CD14+_Monocytes7.25
CD19+_BCells(neg._sel.)7.55
CD33+_Myeloid7.7
CD34+8.75
CD4+_Tcells6.7
CD56+_NKCells8.75
CD71+_EarlyErythroid6.65
CD8+_Tcells6.55
CardiacMyocytes8.85
Caudatenucleus6.25
Cerebellum5.9
CerebellumPeduncles10.8
CiliaryGanglion4.8
CingulateCortex7.45
Colorectaladenocarcinoma7.1
DorsalRootGanglion5.65
FetalThyroid10.75
Fetalbrain6.85
Fetalliver6.35
Fetallung5.9
GlobusPallidus5.25
Heart11.4
Hypothalamus7.35
Kidney6.6
Leukemia_chronicMyelogenousK-5626.45
Leukemia_promyelocytic-HL-606.25
Leukemialymphoblastic(MOLT-4)5.85
Liver9.5
Lung7.85
Lymphnode5.95
Lymphoma_burkitts(Daudi)9.25
Lymphoma_burkitts(Raji)10.2
MedullaOblongata6.5
OccipitalLobe6.15
OlfactoryBulb5.75
Ovary5.1
Pancreas5.9
PancreaticIslet9.25
ParietalLobe10.8
Pituitary9.35
Placenta6.5
Pons6.85
PrefrontalCortex18.4
Prostate11.25
Salivarygland5.8
SkeletalMuscle11.25
Skin5.15
SmoothMuscle7.75
Spinalcord7.7
SubthalamicNucleus6.55
SuperiorCervicalGanglion8.6
TemporalLobe6.55
Testis6.1
TestisGermCell6.1
TestisIntersitial6.05
TestisLeydigCell7.25
TestisSeminiferousTubule6.1
Thalamus7.3
Thymus5.85
Thyroid12.8
Tongue7.15
Tonsil6.9
Trachea6.15
TrigeminalGanglion6.8
Uterus6.3
UterusCorpus6.4
WholeBlood7.8
Wholebrain6.35
colon6.45
pineal_day20.84
pineal_night20.14
retina8.95
small_intestine6.1
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P924999
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala4.98 ± 0.63
Basal Forebrain4.08 ± 0.45
Basal Part of Pons4.43 ± 0.45
Cerebellar Cortex4.52 ± 0.53
Cerebellar Nuclei3.98 ± 0.35
Claustrum5.14 ± 0.86
Epithalamus3.87 ± 0.7
Frontal Lobe4.15 ± 0.68
Globus Pallidus4.36 ± 0.48
Hypothalamus3.96 ± 0.7
Insula4.39 ± 0.75
Limbic Lobe4.87 ± 0.62
Mesencephalon4.34 ± 0.67
Myelencephalon4.43 ± 0.61
Occipital Lobe4.67 ± 0.67
Parietal Lobe4.52 ± 0.71
Pontine Tegmentum4.24 ± 0.71
Striatum4.56 ± 0.71
Subthalamus3.95 ± 0.83
Temporal Lobe4.4 ± 0.63
Thalamus4.23 ± 0.66
White Matter3.85 ± 0.82
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Ahdc1CBCerebellum2.14
3.23
Ahdc1CTXCerebral cortex5.16
4.07
Ahdc1HIPHippocampal region10.31
10.8
Ahdc1HPFHippocampal formation8
7.65
Ahdc1HYHypothalamus0.09
0.09
Ahdc1LSXLateral septal complex0.44
0.69
Ahdc1MBMidbrain1.37
2.02
Ahdc1MYMedulla2.93
3.27
Ahdc1OLFOlfactory bulb4.07
3.5
Ahdc1PPons1.36
1.69
Ahdc1PALPallidum0.14
0.11
Ahdc1RHPRetrohippocampal region4.19
3.3
Ahdc1sAMYStriatum-like amygdalar nuclei0.93
0.54
Ahdc1STRStriatum0.95
0.72
Ahdc1STRdStriatum dorsal region0.99
0.76
Ahdc1STRvStriatum ventral region0.93
0.56
Ahdc1THThalamus1.82
2.08
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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