AutismKB 2.0

Annotation Detail for CSDC2


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Basic Information Top
Gene Symbol:CSDC2 ( PIPPIN,dJ347H13.2 )
Gene Full Name: cold shock domain containing C2, RNA binding
Band: 22q13.2
Quick LinksEntrez ID:27254; OMIM: NA; Uniprot ID:CSDC2_HUMAN; ENSEMBL ID: ENSG00000172346; HGNC ID: 30359
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst0 / 623190 
fetus35 / 56401262
neonate0 / 310970 
infant1 / 2362042
juvenile0 / 555560 
adult25 / 193912112
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor1 / 3436629
chondrosarcoma2 / 8282324
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor4 / 26384515
glioma5 / 10688346
head and neck tumor0 / 1363020 
kidney tumor1 / 6895914
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia1 / 9725010
normal87 / 336030725
ovarian tumor1 / 7668213
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone1 / 7165513
bone marrow0 / 488010 
brain46 / 110098941
cervix1 / 4817120
connective tissue2 / 14925513
ear0 / 162120 
embryonic tissue1 / 2157224
esophagus0 / 202090 
eye11 / 21105452
heart1 / 8962611
intestine0 / 2344720 
kidney8 / 21177737
larynx0 / 241450 
liver0 / 2077430 
lung2 / 3369745
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth0 / 670520 
muscle1 / 1077159
nerve0 / 157680 
ovary1 / 1020519
pancreas1 / 2148124
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate3 / 18934515
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach0 / 966190 
testis2 / 3304426
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus3 / 23287812
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 209981_at
Cell line Expression level Expression bar
721_B_lymphoblasts5.4
Adipocyte5.6
AdrenalCortex30.8
Adrenalgland18.2
Amygdala8.2
Appendix5.65
AtrioventricularNode4.3
BDCA4+_DentriticCells4.75
Bonemarrow6.75
BronchialEpithelialCells5.25
CD105+_Endothelial5.05
CD14+_Monocytes5.15
CD19+_BCells(neg._sel.)5.35
CD33+_Myeloid5.7
CD34+6.75
CD4+_Tcells4.85
CD56+_NKCells6
CD71+_EarlyErythroid5.1
CD8+_Tcells4.3
CardiacMyocytes7.3
Caudatenucleus7.25
Cerebellum41.15
CerebellumPeduncles30.35
CiliaryGanglion3.95
CingulateCortex9.9
Colorectaladenocarcinoma5.6
DorsalRootGanglion4.3
FetalThyroid5.4
Fetalbrain13.85
Fetalliver4.85
Fetallung4.7
GlobusPallidus4.15
Heart233.95
Hypothalamus8.55
Kidney8.55
Leukemia_chronicMyelogenousK-5625.15
Leukemia_promyelocytic-HL-604.95
Leukemialymphoblastic(MOLT-4)4.35
Liver8.05
Lung6.1
Lymphnode5.35
Lymphoma_burkitts(Daudi)6.95
Lymphoma_burkitts(Raji)7.75
MedullaOblongata7.2
OccipitalLobe6
OlfactoryBulb4.4
Ovary19.5
Pancreas5.05
PancreaticIslet10.95
ParietalLobe5.95
Pituitary6.9
Placenta5.7
Pons5.8
PrefrontalCortex16.2
Prostate6.75
Salivarygland3.9
SkeletalMuscle6.5
Skin4.25
SmoothMuscle6.3
Spinalcord8.35
SubthalamicNucleus5.15
SuperiorCervicalGanglion6.35
TemporalLobe5.7
Testis8.3
TestisGermCell12.85
TestisIntersitial5.2
TestisLeydigCell6.75
TestisSeminiferousTubule7.7
Thalamus14.1
Thymus4.35
Thyroid6.3
Tongue5.2
Tonsil5.2
Trachea4.7
TrigeminalGanglion5.6
Uterus35.95
UterusCorpus9.55
WholeBlood5.3
Wholebrain8.5
colon5
pineal_day27.26
pineal_night17.2
retina11.425
small_intestine4.95
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P320095
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala9.07 ± 0.42
Basal Forebrain9.13 ± 0.58
Basal Part of Pons8.92 ± 0.56
Cerebellar Cortex8.79 ± 0.46
Cerebellar Nuclei9.05 ± 0.44
Claustrum9.19 ± 0.59
Epithalamus8.58 ± 0.39
Frontal Lobe8.97 ± 0.53
Globus Pallidus9.75 ± 0.45
Hypothalamus8.7 ± 0.39
Insula9.04 ± 0.54
Limbic Lobe9.21 ± 0.61
Mesencephalon9.07 ± 0.54
Myelencephalon9.12 ± 0.59
Occipital Lobe9.28 ± 0.65
Parietal Lobe9.03 ± 0.53
Pontine Tegmentum8.96 ± 0.51
Striatum9.39 ± 0.56
Subthalamus8.85 ± 0.85
Temporal Lobe8.96 ± 0.61
Thalamus9.11 ± 0.5
White Matter9.23 ± 0.29
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Csdc2CBCerebellum72.58
100
Csdc2CTXCerebral cortex88.01
81.03
Csdc2HIPHippocampal region71.85
85.18
Csdc2HPFHippocampal formation73.62
80.01
Csdc2HYHypothalamus85.15
80.83
Csdc2LSXLateral septal complex73.44
69.02
Csdc2MBMidbrain77.2
77.52
Csdc2MYMedulla85.83
100
Csdc2OLFOlfactory bulb100
100
Csdc2PPons85.3
100
Csdc2PALPallidum73.47
77.17
Csdc2RHPRetrohippocampal region75.83
71.29
Csdc2sAMYStriatum-like amygdalar nuclei84.91
76.7
Csdc2STRStriatum51.19
41.66
Csdc2STRdStriatum dorsal region36.07
28.73
Csdc2STRvStriatum ventral region63.98
47.81
Csdc2THThalamus83
84.39
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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