AutismKB 2.0

Annotation Detail for RBMS3


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Basic Information Top
Gene Symbol:RBMS3 ( FLJ36544 )
Gene Full Name: RNA binding motif, single stranded interacting protein 3
Band: 3p24.1
Quick LinksEntrez ID:27303; OMIM: 605786; Uniprot ID:RBMS3_HUMAN; ENSEMBL ID: ENSG00000144642; HGNC ID: 13427
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst0 / 623190 
fetus16 / 56401228
neonate0 / 310970 
infant0 / 236200 
juvenile3 / 5555653
adult26 / 193912113
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor1 / 9417810
cervical tumor0 / 343660 
chondrosarcoma1 / 8282312
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor3 / 11936925
germ cell tumor2 / 2638457
glioma0 / 1068830 
head and neck tumor2 / 13630214
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor1 / 1031279
lymphoma0 / 717550 
non-neoplasia2 / 9725020
normal65 / 336030719
ovarian tumor0 / 766820 
pancreatic tumor2 / 10461619
primitive neuroectodermal tumor of the CNS11 / 12568087
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor3 / 12494924
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue2 / 13106152
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone1 / 7165513
bone marrow0 / 488010 
brain6 / 11009895
cervix0 / 481710 
connective tissue5 / 14925533
ear0 / 162120 
embryonic tissue2 / 2157229
esophagus0 / 202090 
eye3 / 21105414
heart1 / 8962611
intestine1 / 2344724
kidney0 / 2117770 
larynx0 / 241450 
liver3 / 20774314
lung15 / 33697444
lymph0 / 442700 
lymph node0 / 916100 
mammary gland3 / 15327119
mouth4 / 6705259
muscle3 / 10771527
nerve4 / 15768253
ovary0 / 1020510 
pancreas11 / 21481251
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta4 / 28082514
prostate0 / 1893450 
salivary gland0 / 201550 
skin4 / 21057418
spleen0 / 539520 
stomach5 / 9661951
testis4 / 33044212
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea4 / 5241376
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular2 / 5178038
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 206767_at
Cell line Expression level Expression bar
721_B_lymphoblasts24.5
Adipocyte46.25
AdrenalCortex35.75
Adrenalgland25.15
Amygdala21.25
Appendix26.55
AtrioventricularNode16.8
BDCA4+_DentriticCells21.35
Bonemarrow21
BronchialEpithelialCells23.7
CD105+_Endothelial20.5
CD14+_Monocytes21.05
CD19+_BCells(neg._sel.)21.2
CD33+_Myeloid26.1
CD34+25.05
CD4+_Tcells21.55
CD56+_NKCells23.8
CD71+_EarlyErythroid19.1
CD8+_Tcells19.15
CardiacMyocytes36.55
Caudatenucleus18.3
Cerebellum16.6
CerebellumPeduncles23.35
CiliaryGanglion17.95
CingulateCortex20.9
Colorectaladenocarcinoma20.25
DorsalRootGanglion16.6
FetalThyroid19.45
Fetalbrain19.85
Fetalliver17.75
Fetallung17.95
GlobusPallidus15.15
Heart26.45
Hypothalamus21.9
Kidney16.8
Leukemia_chronicMyelogenousK-56218.45
Leukemia_promyelocytic-HL-6018.05
Leukemialymphoblastic(MOLT-4)16.2
Liver27.1
Lung22.25
Lymphnode17.55
Lymphoma_burkitts(Daudi)26.15
Lymphoma_burkitts(Raji)29.6
MedullaOblongata25.5
OccipitalLobe17.95
OlfactoryBulb23.75
Ovary22.7
Pancreas16.5
PancreaticIslet21.65
ParietalLobe21.75
Pituitary23.85
Placenta20.6
Pons19.5
PrefrontalCortex25.2
Prostate23.7
Salivarygland17.7
SkeletalMuscle56.7
Skin16.15
SmoothMuscle34.5
Spinalcord21.6
SubthalamicNucleus18.8
SuperiorCervicalGanglion115.3
TemporalLobe18.75
Testis17.15
TestisGermCell21.2
TestisIntersitial17.55
TestisLeydigCell20.25
TestisSeminiferousTubule20.2
Thalamus20.75
Thymus15.8
Thyroid25.5
Tongue23.6
Tonsil19.85
Trachea19.7
TrigeminalGanglion75.1
Uterus29.2
UterusCorpus23.65
WholeBlood22.1
Wholebrain16.8
colon20.6
pineal_day25.38
pineal_night24.56
retina25.225
small_intestine19.7
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P359942
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.37 ± 0.43
Basal Forebrain6.51 ± 0.24
Basal Part of Pons5.77 ± 0.27
Cerebellar Cortex5.93 ± 0.33
Cerebellar Nuclei7.5 ± 0.32
Claustrum6.41 ± 0.41
Epithalamus5.99 ± 0.74
Frontal Lobe6.41 ± 0.51
Globus Pallidus7.67 ± 0.36
Hypothalamus6.41 ± 0.32
Insula6.44 ± 0.48
Limbic Lobe6.27 ± 0.56
Mesencephalon6.65 ± 0.43
Myelencephalon6.53 ± 0.48
Occipital Lobe6.41 ± 0.39
Parietal Lobe6.45 ± 0.55
Pontine Tegmentum6.73 ± 0.54
Striatum7.12 ± 0.57
Subthalamus6.6 ± 0.4
Temporal Lobe6.3 ± 0.47
Thalamus6.97 ± 0.37
White Matter6.48 ± 0.41
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Rbms3CBCerebellum19.9
19.7
Rbms3CTXCerebral cortex32.89
13.28
Rbms3HIPHippocampal region22.84
19.28
Rbms3HPFHippocampal formation25.24
16.81
Rbms3HYHypothalamus23.82
12.46
Rbms3LSXLateral septal complex16.1
5.65
Rbms3MBMidbrain39.92
25.9
Rbms3MYMedulla51.72
38
Rbms3OLFOlfactory bulb20.71
10.3
Rbms3PPons46.42
32.26
Rbms3PALPallidum31.65
19.74
Rbms3RHPRetrohippocampal region29.94
12.82
Rbms3sAMYStriatum-like amygdalar nuclei25.79
13.15
Rbms3STRStriatum42.72
17.43
Rbms3STRdStriatum dorsal region46.06
17.8
Rbms3STRvStriatum ventral region51.21
22.24
Rbms3THThalamus60.49
33.28
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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