Annotation Detail for TNRC6A
Basic Information Top
| Gene Symbol: | TNRC6A ( CAGH26,DKFZp666E117,FLJ22043,GW1,GW182,KIAA1460,MGC75384,TNRC6 ) |
|---|---|
| Gene Full Name: | trinucleotide repeat containing 6A |
| Band: | 16p12.1 |
| Quick Links | Entrez ID:27327; OMIM: 610739; Uniprot ID:TNR6A_HUMAN; ENSEMBL ID: ENSG00000090905; HGNC ID: 11969 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.655057
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 5 / 70761 | 70 |  |
| blastocyst | 7 / 62319 | 112 | |
| fetus | 35 / 564012 | 62 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 2 / 55556 | 35 |  |
| adult | 111 / 1939121 | 57 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 1 / 17475 | 57 | |
| breast (mammary gland) tumor | 5 / 94178 | 53 | |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 15 / 82823 | 181 | |
| colorectal tumor | 11 / 114246 | 96 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 2 / 119369 | 16 | |
| germ cell tumor | 9 / 263845 | 34 | |
| glioma | 7 / 106883 | 65 | |
| head and neck tumor | 15 / 136302 | 110 | |
| kidney tumor | 4 / 68959 | 58 | |
| leukemia | 1 / 95842 | 10 |  |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 2 / 103127 | 19 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 4 / 97250 | 41 | |
| normal | 164 / 3360307 | 48 | |
| ovarian tumor | 4 / 76682 | 52 | |
| pancreatic tumor | 4 / 104616 | 38 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 2 / 125191 | 15 | |
| uterine tumor | 2 / 90257 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 1 / 29757 | 33 | |
| blood | 2 / 123478 | 16 | |
| bone | 4 / 71655 | 55 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 47 / 1100989 | 42 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 13 / 149255 | 87 | |
| ear | 1 / 16212 | 61 | |
| embryonic tissue | 20 / 215722 | 92 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 7 / 211054 | 33 | |
| heart | 6 / 89626 | 66 | |
| intestine | 13 / 234472 | 55 | |
| kidney | 14 / 211777 | 66 | |
| larynx | 3 / 24145 | 124 | |
| liver | 4 / 207743 | 19 | |
| lung | 17 / 336974 | 50 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 3 / 91610 | 32 | |
| mammary gland | 7 / 153271 | 45 | |
| mouth | 5 / 67052 | 74 | |
| muscle | 2 / 107715 | 18 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 5 / 102051 | 48 | |
| pancreas | 17 / 214812 | 79 | |
| parathyroid | 2 / 20539 | 97 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 12 / 280825 | 42 | |
| prostate | 11 / 189345 | 58 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 6 / 210574 | 28 | |
| spleen | 2 / 53952 | 37 | |
| stomach | 0 / 96619 | 0 | |
| testis | 12 / 330442 | 36 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 6 / 47473 | 126 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 2 / 52413 | 38 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 6 / 232878 | 25 | |
| vascular | 2 / 51780 | 38 | |
Microarray in - Probe name: A_23_P377806
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.17 ± 0.43 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.67 ± 0.13 | |
| Basal Part of Pons | 5.03 ± 0.55 | |
| Cerebellar Cortex | 5.47 ± 0.44 | |
| Cerebellar Nuclei | 5.31 ± 0.38 | |
| Claustrum | 5.55 ± 0.65 | |
| Epithalamus | 5.13 ± 0.45 | |
| Frontal Lobe | 4.99 ± 0.45 | |
| Globus Pallidus | 5.57 ± 0.41 | |
| Hypothalamus | 5.22 ± 0.53 | |
| Insula | 5.24 ± 0.31 | |
| Limbic Lobe | 5.18 ± 0.59 | |
| Mesencephalon | 5.43 ± 0.59 | |
| Myelencephalon | 5.17 ± 0.51 | |
| Occipital Lobe | 5.69 ± 0.42 | |
| Parietal Lobe | 5.23 ± 0.5 | |
| Pontine Tegmentum | 5.21 ± 0.61 | |
| Striatum | 4.97 ± 0.43 | |
| Subthalamus | 5.18 ± 0.43 | |
| Temporal Lobe | 5.09 ± 0.51 | |
| Thalamus | 5.4 ± 0.43 | |
| White Matter | 5.76 ± 0.45 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Tnrc6a | CB | Cerebellum | 58.43 | |
| 59.57 | | |||
| Tnrc6a | CTX | Cerebral cortex | 49.53 | |
| 37.58 | | |||
| Tnrc6a | HIP | Hippocampal region | 41.22 | |
| 38.92 | | |||
| Tnrc6a | HPF | Hippocampal formation | 45.66 | |
| 39.85 | | |||
| Tnrc6a | HY | Hypothalamus | 71.94 | |
| 61.09 | | |||
| Tnrc6a | LSX | Lateral septal complex | 36.35 | |
| 26.73 | | |||
| Tnrc6a | MB | Midbrain | 64.4 | |
| 58.26 | | |||
| Tnrc6a | MY | Medulla | 58.37 | |
| 61.93 | | |||
| Tnrc6a | OLF | Olfactory bulb | 54.45 | |
| 45.28 | | |||
| Tnrc6a | P | Pons | 51.68 | |
| 54.67 | | |||
| Tnrc6a | PAL | Pallidum | 55.3 | |
| 47.95 | | |||
| Tnrc6a | RHP | Retrohippocampal region | 55.75 | |
| 42.44 | | |||
| Tnrc6a | sAMY | Striatum-like amygdalar nuclei | 67.67 | |
| 57.87 | | |||
| Tnrc6a | STR | Striatum | 24.69 | |
| 18.17 | | |||
| Tnrc6a | STRd | Striatum dorsal region | 11.49 | |
| 8.82 | | |||
| Tnrc6a | STRv | Striatum ventral region | 47.65 | |
| 32.02 | | |||
| Tnrc6a | TH | Thalamus | 51.21 | |
| 42.01 | |