AutismKB 2.0

Annotation Detail for RRP7A


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Basic Information Top
Gene Symbol:RRP7A ( BK126B4.3,CGI-96,MGC150422,MGC150423 )
Gene Full Name: ribosomal RNA processing 7 homolog A (S. cerevisiae)
Band: 22q13.2
Quick LinksEntrez ID:27341; OMIM: NA; Uniprot ID:RRP7A_HUMAN; ENSEMBL ID: ENSG00000189306; HGNC ID: 24286
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst6 / 6231996
fetus4 / 5640127
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult45 / 193912123
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor1 / 9417810
cervical tumor0 / 343660 
chondrosarcoma2 / 8282324
colorectal tumor2 / 11424617
esophageal tumor0 / 172900 
gastrointestinal tumor1 / 1193698
germ cell tumor6 / 26384522
glioma0 / 1068830 
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia1 / 9584210
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal57 / 336030716
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer6 / 10268058
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites1 / 4001524
bladder0 / 297570 
blood2 / 12347816
bone1 / 7165513
bone marrow0 / 488010 
brain16 / 110098914
cervix0 / 481710 
connective tissue2 / 14925513
ear0 / 162120 
embryonic tissue9 / 21572241
esophagus0 / 202090 
eye3 / 21105414
heart1 / 8962611
intestine2 / 2344728
kidney0 / 2117770 
larynx0 / 241450 
liver0 / 2077430 
lung6 / 33697417
lymph0 / 442700 
lymph node0 / 916100 
mammary gland4 / 15327126
mouth0 / 670520 
muscle2 / 10771518
nerve0 / 157680 
ovary0 / 1020510 
pancreas2 / 2148129
parathyroid5 / 20539243
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta7 / 28082524
prostate13 / 18934568
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach0 / 966190 
testis1 / 3304423
thymus0 / 811310 
thyroid1 / 4747321
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus2 / 2328788
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 33307_at
Cell line Expression level Expression bar
721_B_lymphoblasts65.7
Adipocyte4.1
AdrenalCortex4.6
Adrenalgland3.7
Amygdala4.5
Appendix4.4
AtrioventricularNode3.35
BDCA4+_DentriticCells6.65
Bonemarrow4.55
BronchialEpithelialCells4.45
CD105+_Endothelial17.4
CD14+_Monocytes10.5
CD19+_BCells(neg._sel.)6.4
CD33+_Myeloid7.35
CD34+15.7
CD4+_Tcells9.15
CD56+_NKCells5.95
CD71+_EarlyErythroid27.45
CD8+_Tcells4.65
CardiacMyocytes5.55
Caudatenucleus3.95
Cerebellum3.45
CerebellumPeduncles5
CiliaryGanglion3.1
CingulateCortex4.55
Colorectaladenocarcinoma5
DorsalRootGanglion3.3
FetalThyroid4.35
Fetalbrain4.35
Fetalliver3.8
Fetallung3.4
GlobusPallidus3.3
Heart6.35
Hypothalamus4.5
Kidney3.55
Leukemia_chronicMyelogenousK-5624
Leukemia_promyelocytic-HL-605.9
Leukemialymphoblastic(MOLT-4)5.1
Liver5.8
Lung5.7
Lymphnode3.8
Lymphoma_burkitts(Daudi)7.15
Lymphoma_burkitts(Raji)22.05
MedullaOblongata4.05
OccipitalLobe3.95
OlfactoryBulb3.35
Ovary2.95
Pancreas3.45
PancreaticIslet4.6
ParietalLobe4.65
Pituitary5.15
Placenta4.65
Pons4.15
PrefrontalCortex5.45
Prostate5.55
Salivarygland3.55
SkeletalMuscle5
Skin3.4
SmoothMuscle5.1
Spinalcord4.55
SubthalamicNucleus4
SuperiorCervicalGanglion4.85
TemporalLobe4
Testis4.55
TestisGermCell3.75
TestisIntersitial3.7
TestisLeydigCell4.4
TestisSeminiferousTubule3.8
Thalamus4.5
Thymus3.9
Thyroid5.65
Tongue4.2
Tonsil4.55
Trachea3.7
TrigeminalGanglion4.3
Uterus3.55
UterusCorpus3.9
WholeBlood4.8
Wholebrain3.75
colon4.3
pineal_day5.5
pineal_night5.38
retina5.425
small_intestine4.05
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P29303
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.13 ± 0.48
Basal Forebrain6 ± 0.33
Basal Part of Pons5.6 ± 0.46
Cerebellar Cortex5.35 ± 0.25
Cerebellar Nuclei5.44 ± 0.48
Claustrum6.2 ± 0.45
Epithalamus5.21 ± 0.39
Frontal Lobe5.64 ± 0.4
Globus Pallidus6.02 ± 0.19
Hypothalamus5.59 ± 0.6
Insula5.64 ± 0.42
Limbic Lobe6.04 ± 0.34
Mesencephalon5.71 ± 0.59
Myelencephalon5.76 ± 0.44
Occipital Lobe5.6 ± 0.42
Parietal Lobe5.69 ± 0.53
Pontine Tegmentum5.66 ± 0.44
Striatum6.32 ± 0.41
Subthalamus5.69 ± 0.29
Temporal Lobe5.75 ± 0.44
Thalamus5.53 ± 0.41
White Matter6.22 ± 0.49
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
1110014J01RikCBCerebellum18.29
24.76
1110014J01RikCTXCerebral cortex87.78
78.67
1110014J01RikHIPHippocampal region49.11
82.46
1110014J01RikHPFHippocampal formation66.84
86.53
1110014J01RikHYHypothalamus60.29
56.58
1110014J01RikLSXLateral septal complex81.66
70.62
1110014J01RikMBMidbrain33.94
37.38
1110014J01RikMYMedulla21.97
35.12
1110014J01RikOLFOlfactory bulb57.79
59.35
1110014J01RikPPons28.17
40.81
1110014J01RikPALPallidum51.51
54.31
1110014J01RikRHPRetrohippocampal region94.12
93.38
1110014J01RiksAMYStriatum-like amygdalar nuclei60.33
55.28
1110014J01RikSTRStriatum48.26
40.91
1110014J01RikSTRdStriatum dorsal region35.37
28.85
1110014J01RikSTRvStriatum ventral region76.54
63.23
1110014J01RikTHThalamus41.87
39.13
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00005135 24 78 101 LLSTCGLVQSVELQEKPDLAESPK Peptide Atlas
RRP7A_HUMAN_78 24 78 101 LLSTCGLVQSVELQEKPDLAESPK PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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