AutismKB 2.0

Annotation Detail for MCAT


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Basic Information Top
Gene Symbol:MCAT ( FASN2C,MCT,MGC47838,MT,NET62,fabD )
Gene Full Name: malonyl CoA:ACP acyltransferase (mitochondrial)
Band: 22q13.2
Quick LinksEntrez ID:27349; OMIM: NA; Uniprot ID:FABD_HUMAN; ENSEMBL ID: ENSG00000100294; HGNC ID: 29622
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst0 / 623190 
fetus22 / 56401239
neonate0 / 310970 
infant1 / 2362042
juvenile0 / 555560 
adult41 / 193912121
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor5 / 9417853
cervical tumor0 / 343660 
chondrosarcoma1 / 8282312
colorectal tumor3 / 11424626
esophageal tumor0 / 172900 
gastrointestinal tumor4 / 11936933
germ cell tumor3 / 26384511
glioma8 / 10688374
head and neck tumor5 / 13630236
kidney tumor1 / 6895914
leukemia3 / 9584231
liver tumor3 / 9635931
lung tumor6 / 10312758
lymphoma0 / 717550 
non-neoplasia1 / 9725010
normal75 / 336030722
ovarian tumor5 / 7668265
pancreatic tumor2 / 10461619
primitive neuroectodermal tumor of the CNS1 / 1256807
prostate cancer1 / 1026809
retinoblastoma1 / 4635621
skin tumor4 / 12494932
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites2 / 4001549
bladder0 / 297570 
blood2 / 12347816
bone2 / 7165527
bone marrow1 / 4880120
brain24 / 110098921
cervix0 / 481710 
connective tissue2 / 14925513
ear0 / 162120 
embryonic tissue1 / 2157224
esophagus0 / 202090 
eye4 / 21105418
heart2 / 8962622
intestine6 / 23447225
kidney5 / 21177723
larynx0 / 241450 
liver7 / 20774333
lung20 / 33697459
lymph0 / 442700 
lymph node2 / 9161021
mammary gland6 / 15327139
mouth1 / 6705214
muscle4 / 10771537
nerve0 / 157680 
ovary6 / 10205158
pancreas8 / 21481237
parathyroid0 / 205390 
pharynx1 / 4132824
pituitary gland0 / 165850 
placenta3 / 28082510
prostate2 / 18934510
salivary gland1 / 2015549
skin6 / 21057428
spleen0 / 539520 
stomach0 / 966190 
testis5 / 33044215
thymus1 / 8113112
thyroid2 / 4747342
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus2 / 2328788
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 213132_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts24.6
Adipocyte7.15
AdrenalCortex7.7
Adrenalgland6.75
Amygdala8.75
Appendix7.65
AtrioventricularNode5.7
BDCA4+_DentriticCells9
Bonemarrow7.4
BronchialEpithelialCells18.45
CD105+_Endothelial9.35
CD14+_Monocytes7.7
CD19+_BCells(neg._sel.)8.55
CD33+_Myeloid9.2
CD34+26.9
CD4+_Tcells7.1
CD56+_NKCells8.25
CD71+_EarlyErythroid7.4
CD8+_Tcells6.3
CardiacMyocytes11.5
Caudatenucleus6.45
Cerebellum5.85
CerebellumPeduncles8.35
CiliaryGanglion5
CingulateCortex7.45
Colorectaladenocarcinoma18.9
DorsalRootGanglion5.4
FetalThyroid9.55
Fetalbrain8.2
Fetalliver6.1
Fetallung8.15
GlobusPallidus5.25
Heart21.3
Hypothalamus8.85
Kidney8.3
Leukemia_chronicMyelogenousK-5627.25
Leukemia_promyelocytic-HL-6013.95
Leukemialymphoblastic(MOLT-4)7
Liver17.75
Lung29.75
Lymphnode6.3
Lymphoma_burkitts(Daudi)10.2
Lymphoma_burkitts(Raji)10.2
MedullaOblongata6.75
OccipitalLobe6.6
OlfactoryBulb5.55
Ovary4.75
Pancreas5.7
PancreaticIslet7.7
ParietalLobe9.05
Pituitary14.45
Placenta7.55
Pons7.25
PrefrontalCortex8.35
Prostate11.7
Salivarygland5.7
SkeletalMuscle9.55
Skin5.45
SmoothMuscle12.7
Spinalcord7.75
SubthalamicNucleus6.45
SuperiorCervicalGanglion9
TemporalLobe6.6
Testis13.55
TestisGermCell6.3
TestisIntersitial6.15
TestisLeydigCell7.15
TestisSeminiferousTubule6.4
Thalamus7.35
Thymus10
Thyroid12.8
Tongue7.1
Tonsil7
Trachea5.95
TrigeminalGanglion7.75
Uterus6.65
UterusCorpus7
WholeBlood7.85
Wholebrain25.1
colon7.35
pineal_day8.76
pineal_night8.58
retina9.275
small_intestine6.9
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_32_P231880
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala15.78 ± 0.74
Basal Forebrain15.53 ± 0.2
Basal Part of Pons15.5 ± 0.42
Cerebellar Cortex15.01 ± 0.35
Cerebellar Nuclei15.73 ± 0.48
Claustrum16.04 ± 0.68
Epithalamus15.02 ± 0.42
Frontal Lobe15.47 ± 0.5
Globus Pallidus16.06 ± 0.24
Hypothalamus15.54 ± 0.41
Insula15.29 ± 0.47
Limbic Lobe15.55 ± 0.54
Mesencephalon15.66 ± 0.52
Myelencephalon15.53 ± 0.55
Occipital Lobe15.41 ± 0.51
Parietal Lobe15.44 ± 0.51
Pontine Tegmentum15.38 ± 0.45
Striatum15.73 ± 0.5
Subthalamus15.54 ± 0.29
Temporal Lobe15.36 ± 0.53
Thalamus15.56 ± 0.41
White Matter15.98 ± 0.43
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
BC025519CBCerebellum1.22
1.63
BC025519CTXCerebral cortex2.52
3.22
BC025519HIPHippocampal region0.88
1.13
BC025519HPFHippocampal formation1.11
1.2
BC025519HYHypothalamus0.25
0.25
BC025519LSXLateral septal complex0.06
0
BC025519MBMidbrain0.6
0.74
BC025519MYMedulla1
1.11
BC025519OLFOlfactory bulb0.53
0.53
BC025519PPons0.97
1.24
BC025519PALPallidum0.59
0.47
BC025519RHPRetrohippocampal region1.5
1.31
BC025519sAMYStriatum-like amygdalar nuclei1.33
1.68
BC025519STRStriatum0.56
0.65
BC025519STRdStriatum dorsal region0.59
0.69
BC025519STRvStriatum ventral region0.08
0.1
BC025519THThalamus1.25
1.13
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00002517 9 204 212 FNFACLEAR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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