AutismKB 2.0

Annotation Detail for CECR6


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Basic Information Top
Gene Symbol:CECR6 ( - )
Gene Full Name: cat eye syndrome chromosome region, candidate 6
Band: -
Quick LinksEntrez ID:27439; OMIM: NA; Uniprot ID:CECR6_HUMAN; ENSEMBL ID: ENSG00000183307; HGNC ID:
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst2 / 6231932
fetus14 / 56401224
neonate0 / 310970 
infant3 / 23620127
juvenile0 / 555560 
adult5 / 19391212
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma1 / 8282312
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor1 / 2638453
glioma3 / 10688328
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia2 / 9584220
liver tumor0 / 963590 
lung tumor1 / 1031279
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal38 / 336030711
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS2 / 12568015
prostate cancer0 / 1026800 
retinoblastoma2 / 4635643
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood3 / 12347824
bone0 / 716550 
bone marrow0 / 488010 
brain19 / 110098917
cervix0 / 481710 
connective tissue3 / 14925520
ear0 / 162120 
embryonic tissue3 / 21572213
esophagus0 / 202090 
eye4 / 21105418
heart0 / 896260 
intestine0 / 2344720 
kidney0 / 2117770 
larynx0 / 241450 
liver1 / 2077434
lung4 / 33697411
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate0 / 1893450 
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach0 / 966190 
testis2 / 3304426
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular0 / 517800 
Microarray in BioGPS Top
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_265_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.24 ± 0.55
Basal Forebrain5.34 ± 0.39
Basal Part of Pons5.31 ± 0.35
Cerebellar Cortex5.17 ± 0.36
Cerebellar Nuclei4.88 ± 0.48
Claustrum5.55 ± 0.49
Epithalamus4.51 ± 0.46
Frontal Lobe5.35 ± 0.64
Globus Pallidus3.39 ± 0.64
Hypothalamus4.84 ± 0.69
Insula5.43 ± 0.29
Limbic Lobe5.59 ± 0.59
Mesencephalon5.14 ± 0.66
Myelencephalon5.18 ± 0.51
Occipital Lobe5.56 ± 0.53
Parietal Lobe5.3 ± 0.6
Pontine Tegmentum5.22 ± 0.69
Striatum5.41 ± 0.49
Subthalamus5.02 ± 0.46
Temporal Lobe5.4 ± 0.51
Thalamus4.8 ± 0.55
White Matter3.76 ± 0.38
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Cecr6CBCerebellum16.75
22.8
Cecr6CTXCerebral cortex70.79
55.24
Cecr6HIPHippocampal region31.19
37.67
Cecr6HPFHippocampal formation48.07
51.74
Cecr6HYHypothalamus0.42
0.38
Cecr6LSXLateral septal complex1.39
0.93
Cecr6MBMidbrain1.07
1.27
Cecr6MYMedulla2.2
2.09
Cecr6OLFOlfactory bulb56.67
52.29
Cecr6PPons0.83
1.18
Cecr6PALPallidum0.71
0.66
Cecr6RHPRetrohippocampal region74.67
70.12
Cecr6sAMYStriatum-like amygdalar nuclei2.07
2
Cecr6STRStriatum16.94
12.69
Cecr6STRdStriatum dorsal region24.43
18.67
Cecr6STRvStriatum ventral region10.11
6.95
Cecr6THThalamus1.11
1.08
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018