AutismKB 2.0

Annotation Detail for GOLGA2


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Basic Information Top
Gene Symbol:GOLGA2 ( GM130,MGC20672 )
Gene Full Name: golgin A2
Band: 9q34.11
Quick LinksEntrez ID:2801; OMIM: 602580; Uniprot ID:GOGA2_HUMAN; ENSEMBL ID: ENSG00000167110; HGNC ID: 4425
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body5 / 7076170
blastocyst1 / 6231916
fetus28 / 56401249
neonate0 / 310970 
infant0 / 236200 
juvenile1 / 5555617
adult111 / 193912157
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor7 / 9417874
cervical tumor1 / 3436629
chondrosarcoma7 / 8282384
colorectal tumor15 / 114246131
esophageal tumor1 / 1729057
gastrointestinal tumor3 / 11936925
germ cell tumor7 / 26384526
glioma10 / 10688393
head and neck tumor4 / 13630229
kidney tumor8 / 68959116
leukemia4 / 9584241
liver tumor1 / 9635910
lung tumor9 / 10312787
lymphoma1 / 7175513
non-neoplasia1 / 9725010
normal171 / 336030750
ovarian tumor8 / 76682104
pancreatic tumor7 / 10461666
primitive neuroectodermal tumor of the CNS8 / 12568063
prostate cancer5 / 10268048
retinoblastoma2 / 4635643
skin tumor12 / 12494996
soft tissue/muscle tissue tumor5 / 12519139
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland1 / 3319730
ascites0 / 400150 
bladder0 / 297570 
blood5 / 12347840
bone7 / 7165597
bone marrow0 / 488010 
brain26 / 110098923
cervix1 / 4817120
connective tissue9 / 14925560
ear1 / 1621261
embryonic tissue10 / 21572246
esophagus1 / 2020949
eye10 / 21105447
heart7 / 8962678
intestine22 / 23447293
kidney15 / 21177770
larynx1 / 2414541
liver33 / 207743158
lung18 / 33697453
lymph0 / 442700 
lymph node3 / 9161032
mammary gland12 / 15327178
mouth0 / 670520 
muscle5 / 10771546
nerve1 / 1576863
ovary9 / 10205188
pancreas23 / 214812107
parathyroid4 / 20539194
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta12 / 28082542
prostate17 / 18934589
salivary gland0 / 201550 
skin16 / 21057475
spleen0 / 539520 
stomach3 / 9661931
testis7 / 33044221
thymus0 / 811310 
thyroid4 / 4747384
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord0 / 136800 
uterus4 / 23287817
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 35436_at
Cell line Expression level Expression bar
721_B_lymphoblasts48
Adipocyte28.85
AdrenalCortex31.1
Adrenalgland33.1
Amygdala34.95
Appendix27.05
AtrioventricularNode24.05
BDCA4+_DentriticCells31.05
Bonemarrow27.95
BronchialEpithelialCells25.8
CD105+_Endothelial26.05
CD14+_Monocytes29.7
CD19+_BCells(neg._sel.)22
CD33+_Myeloid33.9
CD34+40
CD4+_Tcells37.65
CD56+_NKCells32.9
CD71+_EarlyErythroid17.4
CD8+_Tcells30.7
CardiacMyocytes32.15
Caudatenucleus32.2
Cerebellum26.9
CerebellumPeduncles39.6
CiliaryGanglion26.1
CingulateCortex31.75
Colorectaladenocarcinoma39.5
DorsalRootGanglion24.2
FetalThyroid34.1
Fetalbrain34.2
Fetalliver24.5
Fetallung42.3
GlobusPallidus22.95
Heart39.7
Hypothalamus38.15
Kidney27.05
Leukemia_chronicMyelogenousK-562128.25
Leukemia_promyelocytic-HL-6022.95
Leukemialymphoblastic(MOLT-4)23.25
Liver39.15
Lung38
Lymphnode26.2
Lymphoma_burkitts(Daudi)26.85
Lymphoma_burkitts(Raji)41.05
MedullaOblongata26.1
OccipitalLobe25.75
OlfactoryBulb24.2
Ovary14.85
Pancreas27.25
PancreaticIslet68
ParietalLobe34.75
Pituitary106.25
Placenta39.3
Pons28.8
PrefrontalCortex35.5
Prostate73.65
Salivarygland16.9
SkeletalMuscle38.1
Skin25.55
SmoothMuscle32.9
Spinalcord33.95
SubthalamicNucleus34.3
SuperiorCervicalGanglion37.45
TemporalLobe28.1
Testis28.3
TestisGermCell30.1
TestisIntersitial22.75
TestisLeydigCell25.55
TestisSeminiferousTubule25
Thalamus31.05
Thymus26.4
Thyroid61.2
Tongue33.05
Tonsil26.65
Trachea28.9
TrigeminalGanglion28.85
Uterus35.15
UterusCorpus27.05
WholeBlood24.35
Wholebrain33.35
colon29.8
pineal_day62.46
pineal_night66.36
retina31.375
small_intestine24.2
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P9426
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala8.96 ± 0.22
Basal Forebrain9.2 ± 0.34
Basal Part of Pons9.34 ± 0.16
Cerebellar Cortex9.2 ± 0.29
Cerebellar Nuclei9.29 ± 0.3
Claustrum9.24 ± 0.57
Epithalamus9.62 ± 0.44
Frontal Lobe9.21 ± 0.27
Globus Pallidus9.25 ± 0.15
Hypothalamus9.17 ± 0.26
Insula9.17 ± 0.27
Limbic Lobe9.25 ± 0.26
Mesencephalon9.23 ± 0.32
Myelencephalon9.19 ± 0.29
Occipital Lobe9.35 ± 0.22
Parietal Lobe9.23 ± 0.23
Pontine Tegmentum9.18 ± 0.25
Striatum9.1 ± 0.24
Subthalamus9.21 ± 0.21
Temporal Lobe9.18 ± 0.25
Thalamus9.25 ± 0.22
White Matter9.25 ± 0.31
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Golga2CBCerebellum31.33
55.23
Golga2CTXCerebral cortex100
100
Golga2HIPHippocampal region100
100
Golga2HPFHippocampal formation100
100
Golga2HYHypothalamus36.16
34.84
Golga2LSXLateral septal complex33.22
26.58
Golga2MBMidbrain40.14
45.73
Golga2MYMedulla23.59
35.16
Golga2OLFOlfactory bulb81.24
83.59
Golga2PPons22.88
33.03
Golga2PALPallidum50.67
54.41
Golga2RHPRetrohippocampal region100
100
Golga2sAMYStriatum-like amygdalar nuclei73.63
68.67
Golga2STRStriatum59.76
51.26
Golga2STRdStriatum dorsal region60.08
51.18
Golga2STRvStriatum ventral region66.18
55.28
Golga2THThalamus51.19
52.04
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
GOGA2_HUMAN_329 15 329 343 KLEMTELLLQQFSSR PRIDE
GOGA2_HUMAN_330 14 330 343 LEMTELLLQQFSSR PRIDE
GOGA2_HUMAN_361 15 361 375 AQLEAHLGQVMESVR PRIDE
GOGA2_HUMAN_399 12 399 410 MQQMSEQVHTLR PRIDE
GOGA2_HUMAN_511 10 511 520 QILETMQNDR PRIDE
GOGA2_HUMAN_654 9 654 662 QELQETQER PRIDE
GOGA2_HUMAN_7 12 7 18 QSKLAAAKKKLR PRIDE
GOGA2_HUMAN_722 20 722 741 EAMVAFFNSAVASAEEEQAR PRIDE
GOGA2_HUMAN_944 13 944 956 DNPTAQQIMQLLR PRIDE
PAp00000923 17 356 372 CEAPDANQQLQQAMEER Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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