AutismKB 2.0

Annotation Detail for GOLGA3


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Basic Information Top
Gene Symbol:GOLGA3 ( GCP170,MEA-2 )
Gene Full Name: golgin A3
Band: 12q24.33
Quick LinksEntrez ID:2802; OMIM: 602581; Uniprot ID:GOGA3_HUMAN; ENSEMBL ID: ENSG00000090615; HGNC ID: 4426
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body2 / 7076128
blastocyst0 / 623190 
fetus15 / 56401226
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult98 / 193912150
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor6 / 9417863
cervical tumor0 / 343660 
chondrosarcoma10 / 82823120
colorectal tumor7 / 11424661
esophageal tumor2 / 17290115
gastrointestinal tumor3 / 11936925
germ cell tumor9 / 26384534
glioma7 / 10688365
head and neck tumor3 / 13630222
kidney tumor0 / 689590 
leukemia5 / 9584252
liver tumor1 / 9635910
lung tumor4 / 10312738
lymphoma1 / 7175513
non-neoplasia6 / 9725061
normal101 / 336030730
ovarian tumor5 / 7668265
pancreatic tumor6 / 10461657
primitive neuroectodermal tumor of the CNS4 / 12568031
prostate cancer3 / 10268029
retinoblastoma0 / 463560 
skin tumor3 / 12494924
soft tissue/muscle tissue tumor5 / 12519139
uterine tumor5 / 9025755
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites1 / 4001524
bladder1 / 2975733
blood4 / 12347832
bone7 / 7165597
bone marrow3 / 4880161
brain25 / 110098922
cervix1 / 4817120
connective tissue6 / 14925540
ear0 / 162120 
embryonic tissue2 / 2157229
esophagus2 / 2020998
eye3 / 21105414
heart4 / 8962644
intestine17 / 23447272
kidney6 / 21177728
larynx0 / 241450 
liver2 / 2077439
lung29 / 33697486
lymph1 / 4427022
lymph node1 / 9161010
mammary gland10 / 15327165
mouth5 / 6705274
muscle2 / 10771518
nerve1 / 1576863
ovary4 / 10205139
pancreas14 / 21481265
parathyroid2 / 2053997
pharynx1 / 4132824
pituitary gland0 / 165850 
placenta8 / 28082528
prostate11 / 18934558
salivary gland0 / 201550 
skin7 / 21057433
spleen1 / 5395218
stomach1 / 9661910
testis11 / 33044233
thymus5 / 8113161
thyroid1 / 4747321
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus15 / 23287864
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 202106_at
Cell line Expression level Expression bar
721_B_lymphoblasts163.9
Adipocyte256.6
AdrenalCortex145.85
Adrenalgland113.5
Amygdala139.85
Appendix118.1
AtrioventricularNode114.8
BDCA4+_DentriticCells225.4
Bonemarrow120.7
BronchialEpithelialCells141.7
CD105+_Endothelial146.05
CD14+_Monocytes161.95
CD19+_BCells(neg._sel.)274.95
CD33+_Myeloid185.5
CD34+183.7
CD4+_Tcells280.95
CD56+_NKCells305.55
CD71+_EarlyErythroid112.4
CD8+_Tcells319.3
CardiacMyocytes227.55
Caudatenucleus110.3
Cerebellum109.5
CerebellumPeduncles163
CiliaryGanglion102.55
CingulateCortex153.85
Colorectaladenocarcinoma131.8
DorsalRootGanglion103.85
FetalThyroid201.45
Fetalbrain204.25
Fetalliver115.35
Fetallung123.75
GlobusPallidus115
Heart133.9
Hypothalamus174.1
Kidney94.35
Leukemia_chronicMyelogenousK-562315.55
Leukemia_promyelocytic-HL-60107.9
Leukemialymphoblastic(MOLT-4)170.25
Liver141.35
Lung157.2
Lymphnode123.8
Lymphoma_burkitts(Daudi)184
Lymphoma_burkitts(Raji)187.8
MedullaOblongata117.95
OccipitalLobe137.35
OlfactoryBulb121.15
Ovary91.05
Pancreas174.75
PancreaticIslet219.7
ParietalLobe139.35
Pituitary249.75
Placenta179.8
Pons112.4
PrefrontalCortex368.7
Prostate230.35
Salivarygland117.3
SkeletalMuscle136.7
Skin111.05
SmoothMuscle291.7
Spinalcord135.7
SubthalamicNucleus135.85
SuperiorCervicalGanglion162.2
TemporalLobe131.5
Testis100.65
TestisGermCell114.7
TestisIntersitial118.05
TestisLeydigCell106.15
TestisSeminiferousTubule115.1
Thalamus161.55
Thymus355.15
Thyroid154.5
Tongue141.65
Tonsil138.95
Trachea111.1
TrigeminalGanglion135.8
Uterus117.6
UterusCorpus118.9
WholeBlood131.05
Wholebrain126.05
colon118.45
pineal_day362.22
pineal_night389.1
retina193.925
small_intestine112.8
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P98864
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala7.77 ± 0.43
Basal Forebrain7.23 ± 0.3
Basal Part of Pons7.35 ± 0.38
Cerebellar Cortex6.94 ± 0.27
Cerebellar Nuclei7 ± 0.3
Claustrum7.79 ± 0.57
Epithalamus6.29 ± 0.56
Frontal Lobe7.14 ± 0.47
Globus Pallidus7.74 ± 0.31
Hypothalamus6.87 ± 0.35
Insula7.37 ± 0.45
Limbic Lobe7.61 ± 0.45
Mesencephalon7.33 ± 0.34
Myelencephalon7.29 ± 0.49
Occipital Lobe7.6 ± 0.47
Parietal Lobe7.34 ± 0.47
Pontine Tegmentum7.13 ± 0.46
Striatum7.27 ± 0.43
Subthalamus6.83 ± 0.21
Temporal Lobe7.32 ± 0.45
Thalamus7.25 ± 0.33
White Matter7.52 ± 0.31
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Golga3CBCerebellum0
0
Golga3CTXCerebral cortex0
0
Golga3HIPHippocampal region0
0
Golga3HPFHippocampal formation0
0
Golga3HYHypothalamus0
0
Golga3LSXLateral septal complex0
0
Golga3MBMidbrain0
0
Golga3MYMedulla0
0
Golga3OLFOlfactory bulb0
0
Golga3PPons0
0
Golga3PALPallidum0
0
Golga3RHPRetrohippocampal region0
0
Golga3sAMYStriatum-like amygdalar nuclei0
0
Golga3STRStriatum0
0
Golga3STRdStriatum dorsal region0
0
Golga3STRvStriatum ventral region0
0
Golga3THThalamus0
0
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
GOGA3_HUMAN_1 15 1 15 MDGASAEQDGLQEDR PRIDE
GOGA3_HUMAN_1279 12 1279 1290 QPVGNQEMENLK PRIDE
GOGA3_HUMAN_183 18 183 200 LFSTLDPELMLNPENLPR PRIDE
GOGA3_HUMAN_538 17 538 554 QQMTALQSQLQQVQLER PRIDE
GOGA3_HUMAN_592 23 592 614 LQGEMAHIQVGQMTQAGLLEHLK PRIDE
GOGA3_HUMAN_6 10 6 15 AEQDGLQEDR PRIDE
GOGA3_HUMAN_709 16 709 724 DQQLEALQQEHLDLMK PRIDE
GOGA3_HUMAN_885 10 885 894 QELMQVHGEK PRIDE
GOGA3_HUMAN_913 15 913 927 QHMADLEGHLQSAQK PRIDE
PAp00066715 17 737 753 EQSLDALQTHYDELQAR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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