AutismKB 2.0

Annotation Detail for GOLGB1


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Basic Information Top
Gene Symbol:GOLGB1 ( GCP,GCP372,GIANTIN,GOLIM1 )
Gene Full Name: golgin B1
Band: 3q13.33
Quick LinksEntrez ID:2804; OMIM: 602500; Uniprot ID:GOGB1_HUMAN; ENSEMBL ID: ENSG00000173230; HGNC ID: 4429
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body7 / 7076198
blastocyst3 / 6231948
fetus70 / 564012124
neonate1 / 3109732
infant1 / 2362042
juvenile11 / 55556197
adult251 / 1939121129
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor2 / 12794156
bladder carcinoma0 / 174750 
breast (mammary gland) tumor7 / 9417874
cervical tumor2 / 3436658
chondrosarcoma14 / 82823169
colorectal tumor14 / 114246122
esophageal tumor1 / 1729057
gastrointestinal tumor13 / 119369108
germ cell tumor18 / 26384568
glioma10 / 10688393
head and neck tumor37 / 136302271
kidney tumor11 / 68959159
leukemia3 / 9584231
liver tumor17 / 96359176
lung tumor8 / 10312777
lymphoma1 / 7175513
non-neoplasia14 / 97250143
normal340 / 3360307101
ovarian tumor11 / 76682143
pancreatic tumor3 / 10461628
primitive neuroectodermal tumor of the CNS3 / 12568023
prostate cancer8 / 10268077
retinoblastoma4 / 4635686
skin tumor15 / 124949120
soft tissue/muscle tissue tumor2 / 12519115
uterine tumor16 / 90257177
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue2 / 13106152
adrenal gland3 / 3319790
ascites3 / 4001574
bladder4 / 29757134
blood4 / 12347832
bone5 / 7165569
bone marrow3 / 4880161
brain72 / 110098965
cervix2 / 4817141
connective tissue13 / 14925587
ear0 / 162120 
embryonic tissue13 / 21572260
esophagus1 / 2020949
eye14 / 21105466
heart7 / 8962678
intestine27 / 234472115
kidney33 / 211777155
larynx11 / 24145455
liver45 / 207743216
lung44 / 336974130
lymph0 / 442700 
lymph node15 / 91610163
mammary gland14 / 15327191
mouth14 / 67052208
muscle21 / 107715194
nerve1 / 1576863
ovary13 / 102051127
pancreas3 / 21481213
parathyroid9 / 20539438
pharynx3 / 4132872
pituitary gland1 / 1658560
placenta26 / 28082592
prostate19 / 189345100
salivary gland1 / 2015549
skin20 / 21057494
spleen6 / 53952111
stomach10 / 96619103
testis27 / 33044281
thymus1 / 8113112
thyroid17 / 47473358
tonsil0 / 169990 
trachea8 / 52413152
umbilical cord2 / 13680146
uterus28 / 232878120
vascular3 / 5178057
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 201057_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts45.9
Adipocyte8.55
AdrenalCortex7.1
Adrenalgland4.1
Amygdala6.05
Appendix6.2
AtrioventricularNode4.5
BDCA4+_DentriticCells56.45
Bonemarrow2.65
BronchialEpithelialCells5.65
CD105+_Endothelial7.45
CD14+_Monocytes10.1
CD19+_BCells(neg._sel.)14.05
CD33+_Myeloid44.6
CD34+57.1
CD4+_Tcells26.55
CD56+_NKCells19
CD71+_EarlyErythroid5.1
CD8+_Tcells41.25
CardiacMyocytes6.55
Caudatenucleus7.5
Cerebellum4.2
CerebellumPeduncles4.8
CiliaryGanglion4.6
CingulateCortex7.25
Colorectaladenocarcinoma5.8
DorsalRootGanglion4.45
FetalThyroid8.35
Fetalbrain5.45
Fetalliver5.2
Fetallung6.3
GlobusPallidus4.95
Heart5.65
Hypothalamus14.75
Kidney4.65
Leukemia_chronicMyelogenousK-5624.5
Leukemia_promyelocytic-HL-605.55
Leukemialymphoblastic(MOLT-4)8.4
Liver4.3
Lung5.1
Lymphnode9.7
Lymphoma_burkitts(Daudi)6.55
Lymphoma_burkitts(Raji)7.2
MedullaOblongata7.55
OccipitalLobe7.65
OlfactoryBulb8.7
Ovary21.65
Pancreas19.45
PancreaticIslet23.1
ParietalLobe6.3
Pituitary23
Placenta6.05
Pons7.15
PrefrontalCortex10.6
Prostate16.5
Salivarygland24.4
SkeletalMuscle3.65
Skin10.9
SmoothMuscle11.75
Spinalcord16.7
SubthalamicNucleus10.35
SuperiorCervicalGanglion7.25
TemporalLobe6.05
Testis4.55
TestisGermCell13.3
TestisIntersitial13.65
TestisLeydigCell6.45
TestisSeminiferousTubule13.85
Thalamus8.15
Thymus4.8
Thyroid18.35
Tongue6.15
Tonsil5.6
Trachea5.65
TrigeminalGanglion17.7
Uterus14.5
UterusCorpus5.3
WholeBlood6.6
Wholebrain4.1
colon5.55
pineal_day45.68
pineal_night48.5
retina12.6
small_intestine5.25
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P135787
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala4.9 ± 0.52
Basal Forebrain4.7 ± 0.7
Basal Part of Pons4.63 ± 0.55
Cerebellar Cortex4.67 ± 0.48
Cerebellar Nuclei4.8 ± 0.51
Claustrum4.94 ± 0.56
Epithalamus4.92 ± 0.44
Frontal Lobe4.64 ± 0.47
Globus Pallidus5.01 ± 0.5
Hypothalamus5.06 ± 0.52
Insula4.58 ± 0.36
Limbic Lobe4.66 ± 0.51
Mesencephalon4.68 ± 0.56
Myelencephalon4.75 ± 0.51
Occipital Lobe4.58 ± 0.56
Parietal Lobe4.75 ± 0.47
Pontine Tegmentum4.76 ± 0.57
Striatum4.55 ± 0.47
Subthalamus4.36 ± 0.44
Temporal Lobe4.78 ± 0.55
Thalamus4.66 ± 0.53
White Matter4.73 ± 0.4
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
GOGB1_HUMAN_2686 10 2686 2695 HLHHDAGIMR PRIDE
GOGB1_HUMAN_2846 11 2846 2856 DHLWNELEKFR PRIDE
GOGB1_HUMAN_289 19 289 307 NQILSQQLQQMEAEHNTLR PRIDE
GOGB1_HUMAN_2930 10 2930 2939 AFQIMQEELR PRIDE
GOGB1_HUMAN_768 11 768 778 QLEMNLAEAER PRIDE
GOGB1_HUMAN_961 14 961 974 QNYDEMSPAGQISK PRIDE
PAp00006714 26 781 806 RLDYESQTAHDNLLTEQIHSLSIEAK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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