Annotation Detail for GOT2
Basic Information Top
Gene Symbol: | GOT2 ( FLJ40994,KAT4,KATIV,mitAAT ) |
---|---|
Gene Full Name: | glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2) |
Band: | 16q21 |
Quick Links | Entrez ID:2806; OMIM: 138150; Uniprot ID:AATM_HUMAN; ENSEMBL ID: ENSG00000125166; HGNC ID: 4433 |
Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.599470
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
embryoid body | 7 / 70761 | 98 | |
blastocyst | 7 / 62319 | 112 | |
fetus | 172 / 564012 | 304 | |
neonate | 15 / 31097 | 482 | |
infant | 6 / 23620 | 254 | |
juvenile | 28 / 55556 | 503 | |
adult | 424 / 1939121 | 218 |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
adrenal tumor | 6 / 12794 | 468 | |
bladder carcinoma | 3 / 17475 | 171 | |
breast (mammary gland) tumor | 15 / 94178 | 159 | |
cervical tumor | 9 / 34366 | 261 | |
chondrosarcoma | 10 / 82823 | 120 | |
colorectal tumor | 38 / 114246 | 332 | |
esophageal tumor | 6 / 17290 | 347 | |
gastrointestinal tumor | 31 / 119369 | 259 | |
germ cell tumor | 142 / 263845 | 538 | |
glioma | 44 / 106883 | 411 | |
head and neck tumor | 34 / 136302 | 249 | |
kidney tumor | 32 / 68959 | 464 | |
leukemia | 13 / 95842 | 135 | |
liver tumor | 46 / 96359 | 477 | |
lung tumor | 59 / 103127 | 572 | |
lymphoma | 30 / 71755 | 418 | |
non-neoplasia | 14 / 97250 | 143 | |
normal | 981 / 3360307 | 291 | |
ovarian tumor | 9 / 76682 | 117 | |
pancreatic tumor | 10 / 104616 | 95 | |
primitive neuroectodermal tumor of the CNS | 66 / 125680 | 525 | |
prostate cancer | 44 / 102680 | 428 | |
retinoblastoma | 21 / 46356 | 453 | |
skin tumor | 50 / 124949 | 400 | |
soft tissue/muscle tissue tumor | 48 / 125191 | 383 | |
uterine tumor | 11 / 90257 | 121 |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
adipose tissue | 1 / 13106 | 76 | |
adrenal gland | 14 / 33197 | 421 | |
ascites | 15 / 40015 | 374 | |
bladder | 12 / 29757 | 403 | |
blood | 15 / 123478 | 121 | |
bone | 8 / 71655 | 111 | |
bone marrow | 10 / 48801 | 204 | |
brain | 499 / 1100989 | 453 | |
cervix | 11 / 48171 | 228 | |
connective tissue | 13 / 149255 | 87 | |
ear | 0 / 16212 | 0 | |
embryonic tissue | 26 / 215722 | 120 | |
esophagus | 7 / 20209 | 346 | |
eye | 56 / 211054 | 265 | |
heart | 76 / 89626 | 847 | |
intestine | 70 / 234472 | 298 | |
kidney | 87 / 211777 | 410 | |
larynx | 3 / 24145 | 124 | |
liver | 95 / 207743 | 457 | |
lung | 102 / 336974 | 302 | |
lymph | 23 / 44270 | 519 | |
lymph node | 12 / 91610 | 130 | |
mammary gland | 20 / 153271 | 130 | |
mouth | 38 / 67052 | 566 | |
muscle | 53 / 107715 | 492 | |
nerve | 2 / 15768 | 126 | |
ovary | 18 / 102051 | 176 | |
pancreas | 15 / 214812 | 69 | |
parathyroid | 3 / 20539 | 146 | |
pharynx | 3 / 41328 | 72 | |
pituitary gland | 1 / 16585 | 60 | |
placenta | 68 / 280825 | 242 | |
prostate | 77 / 189345 | 406 | |
salivary gland | 2 / 20155 | 99 | |
skin | 80 / 210574 | 379 | |
spleen | 25 / 53952 | 463 | |
stomach | 18 / 96619 | 186 | |
testis | 104 / 330442 | 314 | |
thymus | 14 / 81131 | 172 | |
thyroid | 14 / 47473 | 294 | |
tonsil | 9 / 16999 | 529 | |
trachea | 15 / 52413 | 286 | |
umbilical cord | 4 / 13680 | 292 | |
uterus | 49 / 232878 | 210 | |
vascular | 22 / 51780 | 424 |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 200708_at
Cell line | Expression level | Expression bar |
---|---|---|
721_B_lymphoblasts | 627.9 | |
Adipocyte | 15.45 | |
AdrenalCortex | 46.95 | |
Adrenalgland | 70.7 | |
Amygdala | 61.45 | |
Appendix | 8.8 | |
AtrioventricularNode | 6.8 | |
BDCA4+_DentriticCells | 75.2 | |
Bonemarrow | 26.9 | |
BronchialEpithelialCells | 212.2 | |
CD105+_Endothelial | 127.5 | |
CD14+_Monocytes | 35.2 | |
CD19+_BCells(neg._sel.) | 50.5 | |
CD33+_Myeloid | 37.15 | |
CD34+ | 159.6 | |
CD4+_Tcells | 56.45 | |
CD56+_NKCells | 53.55 | |
CD71+_EarlyErythroid | 40.8 | |
CD8+_Tcells | 43.55 | |
CardiacMyocytes | 31.1 | |
Caudatenucleus | 49.2 | |
Cerebellum | 119.1 | |
CerebellumPeduncles | 68.6 | |
CiliaryGanglion | 20.15 | |
CingulateCortex | 67.05 | |
Colorectaladenocarcinoma | 32.7 | |
DorsalRootGanglion | 16.25 | |
FetalThyroid | 45.15 | |
Fetalbrain | 53.45 | |
Fetalliver | 106.1 | |
Fetallung | 26.7 | |
GlobusPallidus | 36.35 | |
Heart | 142.15 | |
Hypothalamus | 116.85 | |
Kidney | 73.6 | |
Leukemia_chronicMyelogenousK-562 | 100.55 | |
Leukemia_promyelocytic-HL-60 | 405.1 | |
Leukemialymphoblastic(MOLT-4) | 72.95 | |
Liver | 449.1 | |
Lung | 46.9 | |
Lymphnode | 19.2 | |
Lymphoma_burkitts(Daudi) | 303.85 | |
Lymphoma_burkitts(Raji) | 203.85 | |
MedullaOblongata | 82.45 | |
OccipitalLobe | 84.35 | |
OlfactoryBulb | 20.85 | |
Ovary | 11.85 | |
Pancreas | 24.1 | |
PancreaticIslet | 41.25 | |
ParietalLobe | 52.55 | |
Pituitary | 64.4 | |
Placenta | 25.5 | |
Pons | 39.2 | |
PrefrontalCortex | 100.55 | |
Prostate | 68.95 | |
Salivarygland | 41.3 | |
SkeletalMuscle | 85.5 | |
Skin | 18.05 | |
SmoothMuscle | 46.65 | |
Spinalcord | 55.4 | |
SubthalamicNucleus | 79.15 | |
SuperiorCervicalGanglion | 30.65 | |
TemporalLobe | 49.8 | |
Testis | 71.55 | |
TestisGermCell | 92.4 | |
TestisIntersitial | 26.65 | |
TestisLeydigCell | 25.15 | |
TestisSeminiferousTubule | 20.45 | |
Thalamus | 134.6 | |
Thymus | 44.3 | |
Thyroid | 54.75 | |
Tongue | 56.35 | |
Tonsil | 40.8 | |
Trachea | 41.4 | |
TrigeminalGanglion | 23.8 | |
Uterus | 24.55 | |
UterusCorpus | 26.95 | |
WholeBlood | 24.1 | |
Wholebrain | 215.3 | |
colon | 69.3 | |
pineal_day | 278.56 | |
pineal_night | 218.96 | |
retina | 252.75 | |
small_intestine | 80.95 |
Human Whole Brain Microarrayview in Allen Brain Atlas
- Probe name: A_24_P692198
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue | Expression(mean ± stddev) | Expression Bar |
---|---|---|
Amygdala | 6.53 ± 0.48 | |
Basal Forebrain | 6.56 ± 0.36 | |
Basal Part of Pons | 7.19 ± 0.2 | |
Cerebellar Cortex | 6.74 ± 0.27 | |
Cerebellar Nuclei | 7.37 ± 0.35 | |
Claustrum | 6.95 ± 0.37 | |
Epithalamus | 6.29 ± 0.53 | |
Frontal Lobe | 6.8 ± 0.39 | |
Globus Pallidus | 6.9 ± 0.38 | |
Hypothalamus | 6.65 ± 0.22 | |
Insula | 6.69 ± 0.2 | |
Limbic Lobe | 6.85 ± 0.33 | |
Mesencephalon | 6.83 ± 0.42 | |
Myelencephalon | 6.76 ± 0.42 | |
Occipital Lobe | 7.03 ± 0.31 | |
Parietal Lobe | 6.95 ± 0.35 | |
Pontine Tegmentum | 6.79 ± 0.34 | |
Striatum | 6.21 ± 0.4 | |
Subthalamus | 7.16 ± 0.18 | |
Temporal Lobe | 6.82 ± 0.32 | |
Thalamus | 6.92 ± 0.33 | |
White Matter | 6.68 ± 0.46 |
Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
---|---|---|---|---|
Got2 | CB | Cerebellum | 42.96 | |
100 | ||||
Got2 | CTX | Cerebral cortex | 100 | |
100 | ||||
Got2 | HIP | Hippocampal region | 100 | |
100 | ||||
Got2 | HPF | Hippocampal formation | 100 | |
100 | ||||
Got2 | HY | Hypothalamus | 100 | |
100 | ||||
Got2 | LSX | Lateral septal complex | 100 | |
100 | ||||
Got2 | MB | Midbrain | 100 | |
100 | ||||
Got2 | MY | Medulla | 100 | |
100 | ||||
Got2 | OLF | Olfactory bulb | 100 | |
100 | ||||
Got2 | P | Pons | 100 | |
100 | ||||
Got2 | PAL | Pallidum | 100 | |
100 | ||||
Got2 | RHP | Retrohippocampal region | 100 | |
100 | ||||
Got2 | sAMY | Striatum-like amygdalar nuclei | 100 | |
100 | ||||
Got2 | STR | Striatum | 100 | |
100 | ||||
Got2 | STRd | Striatum dorsal region | 100 | |
100 | ||||
Got2 | STRv | Striatum ventral region | 100 | |
100 | ||||
Got2 | TH | Thalamus | 100 | |
100 |
Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
---|---|---|---|---|---|
AATM_HUMAN_0 | 0 | 0 | 0 | FVTVQTISGTGALR | PRIDE |
AATM_HUMAN_0 | 0 | 0 | 0 | IAAAILNTPDLR | PRIDE |
AATM_HUMAN_0 | 0 | 0 | 0 | IGASFLQR | PRIDE |
AATM_HUMAN_0 | 0 | 0 | 0 | NLDKEYLPIGGLAEFCK | PRIDE |
AATM_HUMAN_107 | 15 | 107 | 121 | ASAELALGENSEVLK | PRIDE |
AATM_HUMAN_108 | 15 | 108 | 122 | ASAELALGENSEVLK | PRIDE |
AATM_HUMAN_108 | 18 | 108 | 125 | ASAELALGENSEVLKSGR | PRIDE |
AATM_HUMAN_125 | 14 | 125 | 138 | FVTVQTISGTGALR | PRIDE |
AATM_HUMAN_126 | 14 | 126 | 139 | FVTVQTISGTGALR | PRIDE |
AATM_HUMAN_139 | 8 | 139 | 146 | IGASFLQR | PRIDE |
AATM_HUMAN_140 | 8 | 140 | 147 | IGASFLQR | PRIDE |
AATM_HUMAN_153 | 17 | 153 | 169 | DVFLPKPTWGNHTPIFR | PRIDE |
AATM_HUMAN_154 | 17 | 154 | 170 | DVFLPKPTWGNHTPIFR | PRIDE |
AATM_HUMAN_170 | 10 | 170 | 179 | DAGMQLQGYR | PRIDE |
AATM_HUMAN_171 | 10 | 171 | 180 | DAGMQLQGYR | PRIDE |
AATM_HUMAN_172 | 9 | 172 | 180 | AGMQLQGYR | PRIDE |
AATM_HUMAN_186 | 15 | 186 | 200 | TCGFDFTGAVEDISK | PRIDE |
AATM_HUMAN_201 | 27 | 201 | 227 | IPEQSVLLLHACAHNPTGVDPRPEQWK | PRIDE |
AATM_HUMAN_228 | 7 | 228 | 234 | EIATVVK | PRIDE |
AATM_HUMAN_262 | 17 | 262 | 278 | HFIEQGINVCLCQSYAK | PRIDE |
AATM_HUMAN_263 | 17 | 263 | 279 | HFIEQGINVCLCQSYAK | PRIDE |
AATM_HUMAN_280 | 8 | 280 | 287 | NMGLYGER | PRIDE |
AATM_HUMAN_287 | 15 | 287 | 301 | VGAFTMVCKDADEAK | PRIDE |
AATM_HUMAN_287 | 9 | 287 | 295 | VGAFTMVCK | PRIDE |
AATM_HUMAN_310 | 16 | 310 | 325 | ILIRPMYSNPPLNGAR | PRIDE |
AATM_HUMAN_314 | 12 | 314 | 325 | PMYSNPPLNGAR | PRIDE |
AATM_HUMAN_325 | 12 | 325 | 336 | IAAAILNTPDLR | PRIDE |
AATM_HUMAN_325 | 13 | 325 | 337 | IAAAILNTPDLRK | PRIDE |
AATM_HUMAN_326 | 12 | 326 | 337 | IAAAILNTPDLR | PRIDE |
AATM_HUMAN_326 | 13 | 326 | 338 | IAAAILNTPDLRK | PRIDE |
AATM_HUMAN_327 | 11 | 327 | 337 | AAAILNTPDLR | PRIDE |
AATM_HUMAN_338 | 8 | 338 | 345 | KQWLQEVK | PRIDE |
AATM_HUMAN_356 | 8 | 356 | 363 | TQLVSNLK | PRIDE |
AATM_HUMAN_356 | 9 | 356 | 364 | TQLVSNLKK | PRIDE |
AATM_HUMAN_364 | 29 | 364 | 392 | EGSTHNWQHITDQIGMFCFTGLKPEQVER | PRIDE |
AATM_HUMAN_365 | 29 | 365 | 393 | EGSTHNWQHITDQIGMFCFTGLKPEQVER | PRIDE |
AATM_HUMAN_397 | 8 | 397 | 404 | EFSIYMTK | PRIDE |
AATM_HUMAN_407 | 23 | 407 | 429 | ISVAGVTSSNVGYLAHAIHQVTK | PRIDE |
AATM_HUMAN_408 | 23 | 408 | 430 | ISVAGVTSSNVGYLAHAIHQVTK | PRIDE |
AATM_HUMAN_43 | 11 | 43 | 53 | PILGVTEAFKR | PRIDE |
AATM_HUMAN_58 | 23 | 58 | 80 | KMNLGVGAYRDDNGKPYVLPSVR | PRIDE |
AATM_HUMAN_59 | 10 | 59 | 68 | KMNLGVGAYR | PRIDE |
AATM_HUMAN_59 | 9 | 59 | 67 | MNLGVGAYR | PRIDE |
AATM_HUMAN_60 | 22 | 60 | 81 | MNLGVGAYRDDNGKPYVLPSVR | PRIDE |
AATM_HUMAN_60 | 9 | 60 | 68 | MNLGVGAYR | PRIDE |
AATM_HUMAN_69 | 13 | 69 | 81 | DDNGKPYVLPSVR | PRIDE |
AATM_HUMAN_90 | 17 | 90 | 106 | NLDKEYLPIGGLAEFCK | PRIDE |
AATM_HUMAN_91 | 17 | 91 | 107 | NLDKEYLPIGGLAEFCK | PRIDE |
AATM_HUMAN_95 | 13 | 95 | 107 | EYLPIGGLAEFCK | PRIDE |
PAp00002299 | 13 | 95 | 107 | EYLPIGGLAEFCK | Peptide Atlas |