Annotation Detail for GPD1
Basic Information Top
| Gene Symbol: | GPD1 ( FLJ26652 ) |
|---|---|
| Gene Full Name: | glycerol-3-phosphate dehydrogenase 1 (soluble) |
| Band: | 12q13.12 |
| Quick Links | Entrez ID:2819; OMIM: 138420; Uniprot ID:GPDA_HUMAN; ENSEMBL ID: ENSG00000167588; HGNC ID: 4455 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.524418
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 1 / 62319 | 16 |  |
| fetus | 28 / 564012 | 49 | |
| neonate | 0 / 31097 | 0 | |
| infant | 1 / 23620 | 42 | |
| juvenile | 5 / 55556 | 89 |  |
| adult | 95 / 1939121 | 48 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 3 / 82823 | 36 | |
| colorectal tumor | 1 / 114246 | 8 |  |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 0 / 263845 | 0 | |
| glioma | 2 / 106883 | 18 | |
| head and neck tumor | 1 / 136302 | 7 | |
| kidney tumor | 3 / 68959 | 43 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 3 / 96359 | 31 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 5 / 97250 | 51 | |
| normal | 256 / 3360307 | 76 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 24 / 13106 | 1831 |  |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 1 / 123478 | 8 | |
| bone | 3 / 71655 | 41 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 105 / 1100989 | 95 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 2 / 149255 | 13 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 1 / 215722 | 4 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 15 / 211054 | 71 | |
| heart | 15 / 89626 | 167 | |
| intestine | 10 / 234472 | 42 | |
| kidney | 38 / 211777 | 179 | |
| larynx | 0 / 24145 | 0 | |
| liver | 8 / 207743 | 38 | |
| lung | 14 / 336974 | 41 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 23 / 153271 | 150 | |
| mouth | 3 / 67052 | 44 | |
| muscle | 26 / 107715 | 241 |  |
| nerve | 4 / 15768 | 253 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 1 / 214812 | 4 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 1 / 210574 | 4 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 1 / 96619 | 10 | |
| testis | 4 / 330442 | 12 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 2 / 52413 | 38 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 0 / 232878 | 0 | |
| vascular | 0 / 51780 | 0 |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 213706_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 5.85 | |
| Adipocyte | 703.5 | |
| AdrenalCortex | 6.5 | |
| Adrenalgland | 6.3 | |
| Amygdala | 7.05 | |
| Appendix | 5.55 | |
| AtrioventricularNode | 4.6 | |
| BDCA4+_DentriticCells | 5.65 | |
| Bonemarrow | 5.45 | |
| BronchialEpithelialCells | 5.55 | |
| CD105+_Endothelial | 5.7 | |
| CD14+_Monocytes | 6 | |
| CD19+_BCells(neg._sel.) | 5.55 | |
| CD33+_Myeloid | 6.8 | |
| CD34+ | 6.7 | |
| CD4+_Tcells | 5.75 | |
| CD56+_NKCells | 5.85 | |
| CD71+_EarlyErythroid | 5.05 | |
| CD8+_Tcells | 4.6 | |
| CardiacMyocytes | 7.15 | |
| Caudatenucleus | 5.4 | |
| Cerebellum | 4.6 | |
| CerebellumPeduncles | 10 | |
| CiliaryGanglion | 6.2 | |
| CingulateCortex | 6.95 | |
| Colorectaladenocarcinoma | 5.65 | |
| DorsalRootGanglion | 4.1 | |
| FetalThyroid | 7.3 | |
| Fetalbrain | 5.35 | |
| Fetalliver | 4.8 | |
| Fetallung | 4.35 | |
| GlobusPallidus | 4.05 | |
| Heart | 8.3 | |
| Hypothalamus | 12.4 | |
| Kidney | 74.15 | |
| Leukemia_chronicMyelogenousK-562 | 4.85 | |
| Leukemia_promyelocytic-HL-60 | 4.65 | |
| Leukemialymphoblastic(MOLT-4) | 5.9 | |
| Liver | 100.2 | |
| Lung | 19.55 | |
| Lymphnode | 6.25 | |
| Lymphoma_burkitts(Daudi) | 8 | |
| Lymphoma_burkitts(Raji) | 7.75 | |
| MedullaOblongata | 5.5 | |
| OccipitalLobe | 5.1 | |
| OlfactoryBulb | 4.15 | |
| Ovary | 3.65 | |
| Pancreas | 4.15 | |
| PancreaticIslet | 5.95 | |
| ParietalLobe | 9.05 | |
| Pituitary | 6.35 | |
| Placenta | 5.05 | |
| Pons | 6.2 | |
| PrefrontalCortex | 6.7 | |
| Prostate | 6.65 | |
| Salivarygland | 4.25 | |
| SkeletalMuscle | 29.7 | |
| Skin | 4.45 | |
| SmoothMuscle | 6.4 | |
| Spinalcord | 35.95 | |
| SubthalamicNucleus | 5.05 | |
| SuperiorCervicalGanglion | 6.2 | |
| TemporalLobe | 6 | |
| Testis | 5.1 | |
| TestisGermCell | 4.8 | |
| TestisIntersitial | 4.75 | |
| TestisLeydigCell | 6.55 | |
| TestisSeminiferousTubule | 8.1 | |
| Thalamus | 11 | |
| Thymus | 10.45 | |
| Thyroid | 7.45 | |
| Tongue | 21.1 | |
| Tonsil | 6.5 | |
| Trachea | 6.35 | |
| TrigeminalGanglion | 5.45 | |
| Uterus | 4.65 | |
| UterusCorpus | 4.9 | |
| WholeBlood | 6.15 | |
| Wholebrain | 5 | |
| colon | 12.1 | |
| pineal_day | 6.78 | |
| pineal_night | 6.66 | |
| retina | 12.7 | |
| small_intestine | 26.2 | |
- Probe name: A_23_P162660
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.2 ± 0.51 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.1 ± 0.38 | |
| Basal Part of Pons | 5.34 ± 0.57 | |
| Cerebellar Cortex | 5.08 ± 0.41 | |
| Cerebellar Nuclei | 5.95 ± 0.6 | |
| Claustrum | 4.92 ± 0.78 | |
| Epithalamus | 5.89 ± 0.39 | |
| Frontal Lobe | 5.22 ± 0.54 | |
| Globus Pallidus | 6.49 ± 0.4 | |
| Hypothalamus | 4.9 ± 0.71 | |
| Insula | 4.74 ± 0.44 | |
| Limbic Lobe | 5.23 ± 0.58 | |
| Mesencephalon | 5.09 ± 0.72 | |
| Myelencephalon | 5.24 ± 0.59 | |
| Occipital Lobe | 4.89 ± 0.39 | |
| Parietal Lobe | 5.06 ± 0.66 | |
| Pontine Tegmentum | 5.14 ± 0.43 | |
| Striatum | 4.81 ± 0.56 | |
| Subthalamus | 5.31 ± 0.33 | |
| Temporal Lobe | 5.02 ± 0.48 | |
| Thalamus | 4.94 ± 0.58 | |
| White Matter | 7.32 ± 0.43 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Gpd1 | CB | Cerebellum | 40.37 | |
| 100 | | |||
| Gpd1 | CTX | Cerebral cortex | 100 | |
| 100 | | |||
| Gpd1 | HIP | Hippocampal region | 100 | |
| 100 | | |||
| Gpd1 | HPF | Hippocampal formation | 98.28 | |
| 100 | | |||
| Gpd1 | HY | Hypothalamus | 10.25 | |
| 7.58 | | |||
| Gpd1 | LSX | Lateral septal complex | 32.7 | |
| 29.33 | | |||
| Gpd1 | MB | Midbrain | 19.51 | |
| 16.45 | | |||
| Gpd1 | MY | Medulla | 45.99 | |
| 44.86 | | |||
| Gpd1 | OLF | Olfactory bulb | 76.04 | |
| 74.67 | | |||
| Gpd1 | P | Pons | 34.18 | |
| 29.56 | | |||
| Gpd1 | PAL | Pallidum | 17.32 | |
| 15.93 | | |||
| Gpd1 | RHP | Retrohippocampal region | 75.97 | |
| 80.54 | | |||
| Gpd1 | sAMY | Striatum-like amygdalar nuclei | 21.39 | |
| 20.2 | | |||
| Gpd1 | STR | Striatum | 93.75 | |
| 86 | | |||
| Gpd1 | STRd | Striatum dorsal region | 100 | |
| 100 | | |||
| Gpd1 | STRv | Striatum ventral region | 74.64 | |
| 61.87 | | |||
| Gpd1 | TH | Thalamus | 21.83 | |
| 19.76 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00184845 | 14 | 49 | 62 | KLTEIINTQHENVK | Peptide Atlas |