Annotation Detail for GPD2
Basic Information Top
| Gene Symbol: | GPD2 ( GDH2,GPDM,mGPDH ) |
|---|---|
| Gene Full Name: | glycerol-3-phosphate dehydrogenase 2 (mitochondrial) |
| Band: | 2q24.1 |
| Quick Links | Entrez ID:2820; OMIM: 138430; Uniprot ID:GPDM_HUMAN; ENSEMBL ID: ENSG00000115159; HGNC ID: 4456 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.512382
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 4 / 70761 | 56 |  |
| blastocyst | 4 / 62319 | 64 | |
| fetus | 45 / 564012 | 79 | |
| neonate | 4 / 31097 | 128 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 |  |
| adult | 74 / 1939121 | 38 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 1 / 17475 | 57 | |
| breast (mammary gland) tumor | 4 / 94178 | 42 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 4 / 82823 | 48 | |
| colorectal tumor | 8 / 114246 | 70 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 7 / 119369 | 58 | |
| germ cell tumor | 9 / 263845 | 34 | |
| glioma | 3 / 106883 | 28 | |
| head and neck tumor | 15 / 136302 | 110 | |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 3 / 96359 | 31 | |
| lung tumor | 2 / 103127 | 19 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 1 / 97250 | 10 |  |
| normal | 159 / 3360307 | 47 | |
| ovarian tumor | 5 / 76682 | 65 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 | |
| prostate cancer | 4 / 102680 | 38 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 4 / 124949 | 32 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 9 / 90257 | 99 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 1 / 29757 | 33 | |
| blood | 2 / 123478 | 16 | |
| bone | 3 / 71655 | 41 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 54 / 1100989 | 49 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 6 / 149255 | 40 | |
| ear | 4 / 16212 | 246 |  |
| embryonic tissue | 15 / 215722 | 69 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 6 / 211054 | 28 | |
| heart | 1 / 89626 | 11 | |
| intestine | 12 / 234472 | 51 | |
| kidney | 7 / 211777 | 33 | |
| larynx | 1 / 24145 | 41 | |
| liver | 8 / 207743 | 38 | |
| lung | 11 / 336974 | 32 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 2 / 91610 | 21 | |
| mammary gland | 6 / 153271 | 39 | |
| mouth | 11 / 67052 | 164 | |
| muscle | 9 / 107715 | 83 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 6 / 102051 | 58 | |
| pancreas | 6 / 214812 | 27 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 2 / 41328 | 48 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 5 / 280825 | 17 | |
| prostate | 6 / 189345 | 31 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 9 / 210574 | 42 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 7 / 96619 | 72 | |
| testis | 16 / 330442 | 48 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 12 / 52413 | 228 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 13 / 232878 | 55 | |
| vascular | 1 / 51780 | 19 | |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 210007_s_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 8.05 | |
| Adipocyte | 6.3 | |
| AdrenalCortex | 7.65 | |
| Adrenalgland | 5.6 | |
| Amygdala | 6.45 | |
| Appendix | 13.9 | |
| AtrioventricularNode | 6.15 | |
| BDCA4+_DentriticCells | 6.4 | |
| Bonemarrow | 6.7 | |
| BronchialEpithelialCells | 6.4 | |
| CD105+_Endothelial | 6.25 | |
| CD14+_Monocytes | 11.65 | |
| CD19+_BCells(neg._sel.) | 7.6 | |
| CD33+_Myeloid | 9.9 | |
| CD34+ | 8 | |
| CD4+_Tcells | 6.75 | |
| CD56+_NKCells | 9.05 | |
| CD71+_EarlyErythroid | 6.1 | |
| CD8+_Tcells | 5.9 | |
| CardiacMyocytes | 10.1 | |
| Caudatenucleus | 5.8 | |
| Cerebellum | 5.25 | |
| CerebellumPeduncles | 7.65 | |
| CiliaryGanglion | 5.1 | |
| CingulateCortex | 6.65 | |
| Colorectaladenocarcinoma | 6.45 | |
| DorsalRootGanglion | 5.2 | |
| FetalThyroid | 6.25 | |
| Fetalbrain | 6.25 | |
| Fetalliver | 5.65 | |
| Fetallung | 4.9 | |
| GlobusPallidus | 5.1 | |
| Heart | 9.8 | |
| Hypothalamus | 6.7 | |
| Kidney | 5.45 | |
| Leukemia_chronicMyelogenousK-562 | 5.75 | |
| Leukemia_promyelocytic-HL-60 | 5.6 | |
| Leukemialymphoblastic(MOLT-4) | 5 | |
| Liver | 9.2 | |
| Lung | 6.95 | |
| Lymphnode | 5.3 | |
| Lymphoma_burkitts(Daudi) | 8.4 | |
| Lymphoma_burkitts(Raji) | 9.5 | |
| MedullaOblongata | 5.8 | |
| OccipitalLobe | 5.7 | |
| OlfactoryBulb | 5.05 | |
| Ovary | 4.6 | |
| Pancreas | 5.6 | |
| PancreaticIslet | 6.9 | |
| ParietalLobe | 7 | |
| Pituitary | 7.45 | |
| Placenta | 6.4 | |
| Pons | 6.25 | |
| PrefrontalCortex | 7.8 | |
| Prostate | 7.3 | |
| Salivarygland | 5.35 | |
| SkeletalMuscle | 9.6 | |
| Skin | 11.75 | |
| SmoothMuscle | 7.3 | |
| Spinalcord | 6.75 | |
| SubthalamicNucleus | 6.1 | |
| SuperiorCervicalGanglion | 8.8 | |
| TemporalLobe | 5.95 | |
| Testis | 5.45 | |
| TestisGermCell | 5.35 | |
| TestisIntersitial | 13.8 | |
| TestisLeydigCell | 6.55 | |
| TestisSeminiferousTubule | 5.8 | |
| Thalamus | 6.6 | |
| Thymus | 4.85 | |
| Thyroid | 7.7 | |
| Tongue | 7.05 | |
| Tonsil | 6.25 | |
| Trachea | 5.25 | |
| TrigeminalGanglion | 10.7 | |
| Uterus | 5.1 | |
| UterusCorpus | 6.05 | |
| WholeBlood | 6.95 | |
| Wholebrain | 5.05 | |
| colon | 7.35 | |
| pineal_day | 7.84 | |
| pineal_night | 7.7 | |
| retina | 7.65 | |
| small_intestine | 6.15 | |
- Probe name: CUST_14791_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 6.54 ± 0.4 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 6.02 ± 0.27 | |
| Basal Part of Pons | 5.48 ± 0.56 | |
| Cerebellar Cortex | 6.16 ± 0.31 | |
| Cerebellar Nuclei | 5.34 ± 0.4 | |
| Claustrum | 7.16 ± 0.62 | |
| Epithalamus | 5.67 ± 0.27 | |
| Frontal Lobe | 6.03 ± 0.43 | |
| Globus Pallidus | 5.71 ± 0.43 | |
| Hypothalamus | 6.24 ± 0.29 | |
| Insula | 6.37 ± 0.28 | |
| Limbic Lobe | 6.42 ± 0.63 | |
| Mesencephalon | 6.03 ± 0.53 | |
| Myelencephalon | 6.1 ± 0.51 | |
| Occipital Lobe | 5.91 ± 0.42 | |
| Parietal Lobe | 6 ± 0.49 | |
| Pontine Tegmentum | 6.25 ± 0.44 | |
| Striatum | 6.49 ± 0.44 | |
| Subthalamus | 5.95 ± 0.44 | |
| Temporal Lobe | 6.24 ± 0.52 | |
| Thalamus | 5.79 ± 0.4 | |
| White Matter | 4.59 ± 0.13 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Gpd2 | CB | Cerebellum | 15.87 | |
| 16.48 | | |||
| Gpd2 | CTX | Cerebral cortex | 86.01 | |
| 65.14 | | |||
| Gpd2 | HIP | Hippocampal region | 82.74 | |
| 100 | | |||
| Gpd2 | HPF | Hippocampal formation | 85.77 | |
| 91.91 | | |||
| Gpd2 | HY | Hypothalamus | 13.09 | |
| 9.72 | | |||
| Gpd2 | LSX | Lateral septal complex | 11.7 | |
| 8.51 | | |||
| Gpd2 | MB | Midbrain | 12.77 | |
| 10.95 | | |||
| Gpd2 | MY | Medulla | 17.68 | |
| 16 | | |||
| Gpd2 | OLF | Olfactory bulb | 55.08 | |
| 43.03 | | |||
| Gpd2 | P | Pons | 17.08 | |
| 14.35 | | |||
| Gpd2 | PAL | Pallidum | 10.97 | |
| 8.6 | | |||
| Gpd2 | RHP | Retrohippocampal region | 90.9 | |
| 80.09 | | |||
| Gpd2 | sAMY | Striatum-like amygdalar nuclei | 26.75 | |
| 20.11 | | |||
| Gpd2 | STR | Striatum | 13.93 | |
| 10.69 | | |||
| Gpd2 | STRd | Striatum dorsal region | 12.18 | |
| 9.82 | | |||
| Gpd2 | STRv | Striatum ventral region | 12.28 | |
| 8.2 | | |||
| Gpd2 | TH | Thalamus | 9.3 | |
| 8.47 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| GPDM_HUMAN_144 | 22 | 144 | 165 | ANLLEIAPHLSAPLPIMLPVYK | PRIDE |
| GPDM_HUMAN_227 | 11 | 227 | 237 | MNLAIALTAAR | PRIDE |
| GPDM_HUMAN_238 | 16 | 238 | 253 | YGAATANYMEVVSLLK | PRIDE |
| GPDM_HUMAN_339 | 9 | 339 | 347 | VIFFLPWQK | PRIDE |
| GPDM_HUMAN_441 | 12 | 441 | 452 | SMAEDTINAAVK | PRIDE |
| GPDM_HUMAN_525 | 13 | 525 | 537 | LVSEFPYIEAEVK | PRIDE |
| GPDM_HUMAN_557 | 15 | 557 | 571 | LAFLNVQAAEEALPR | PRIDE |
| GPDM_HUMAN_94 | 16 | 94 | 109 | TALVERDDFSSGTSSR | PRIDE |
| PAp00001104 | 13 | 270 | 282 | CKDVLTGQEFDVR | Peptide Atlas |